📄 cmakelists.txt

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         ${ITK_DATA_ROOT}/Input/mini-ten-nomask-slow.nrrd)
ADD_TEST(itkNrrdDiffusionTensor3DImageReadWriteTest ${IO_TESTS}
  --compare ${ITK_DATA_ROOT}/Baseline/IO/mini-ten.nrrd
            ${ITK_TEST_OUTPUT_DIR}/mini-ten.nrrd
  itkNrrdDiffusionTensor3DImageReadWriteTest
            ${ITK_DATA_ROOT}/Input/mini-ten-nomask-fast.nrrd
            ${ITK_TEST_OUTPUT_DIR}/mini-ten.nrrd)
ADD_TEST(itkNrrdDiffusionTensor3DImageReadWriteTest4 ${IO_TESTS}
  --compare ${ITK_DATA_ROOT}/Baseline/IO/small-tensors.nhdr
            ${ITK_TEST_OUTPUT_DIR}/small-tensors.nhdr
  itkNrrdDiffusionTensor3DImageReadWriteTest
            ${ITK_DATA_ROOT}/Input/small-tensors.nhdr
            ${ITK_TEST_OUTPUT_DIR}/small-tensors.nhdr)
ADD_TEST(itkNrrdDiffusionTensor3DImageReadTensorDoubleWriteTensorDouble ${IO_TESTS} 
  --compare ${ITK_DATA_ROOT}/Baseline/IO/small-tensors-double.nrrd
            ${ITK_TEST_OUTPUT_DIR}/small-tensors-double.nrrd
  itkNrrdDiffusionTensor3DImageReadTensorDoubleWriteTensorDoubleTest
            ${ITK_DATA_ROOT}/Input/small-tensors.nhdr
            ${ITK_TEST_OUTPUT_DIR}/small-tensors-double.nrrd)
# Complex values
ADD_TEST(itkNrrdComplexImageReadTest ${IO_TESTS}
         itkNrrdComplexImageReadTest
         ${ITK_DATA_ROOT}/Input/mini-complex-slow.nrrd)
ADD_TEST(itkNrrdComplexImageReadWriteTest ${IO_TESTS}
  --compare ${ITK_DATA_ROOT}/Baseline/IO/mini-complex-fast.nrrd
            ${ITK_TEST_OUTPUT_DIR}/mini-complex.nrrd
  itkNrrdComplexImageReadWriteTest
            ${ITK_DATA_ROOT}/Input/mini-complex-slow.nrrd
            ${ITK_TEST_OUTPUT_DIR}/mini-complex.nrrd)
# vector values
ADD_TEST(itkNrrdVectorImageReadTest ${IO_TESTS}
         itkNrrdVectorImageReadTest
         ${ITK_DATA_ROOT}/Input/mini-vector-fast.nrrd)
ADD_TEST(itkNrrdVectorImageReadWriteTest ${IO_TESTS}
  --compare ${ITK_DATA_ROOT}/Baseline/IO/mini-vector.nrrd
            ${ITK_TEST_OUTPUT_DIR}/mini-vector.nrrd
  itkNrrdVectorImageReadWriteTest
            ${ITK_DATA_ROOT}/Input/mini-vector-slow.nrrd
            ${ITK_TEST_OUTPUT_DIR}/mini-vector.nrrd)
# covariant vector values
ADD_TEST(itkNrrdCovariantVectorImageReadTest ${IO_TESTS}
         itkNrrdCovariantVectorImageReadTest
         ${ITK_DATA_ROOT}/Input/mini-covector-fast.nrrd)
ADD_TEST(itkNrrdCovariantVectorImageReadWriteTest ${IO_TESTS}
  --compare ${ITK_DATA_ROOT}/Baseline/IO/mini-covector.nrrd
            ${ITK_TEST_OUTPUT_DIR}/mini-covector.nrrd
  itkNrrdCovariantVectorImageReadWriteTest
            ${ITK_DATA_ROOT}/Input/mini-covector-slow.nrrd
            ${ITK_TEST_OUTPUT_DIR}/mini-covector.nrrd)

# Note: Directions are transposed here with respect to the MetaImage header
ADD_TEST(itkImageIODirection3DTest01 ${IO_TESTS} itkImageIODirection3DTest
   ${ITK_DATA_ROOT}/Input/HeadMRVolumeWithDirectionIdentity.mhd
   1.0    0.0   0.0 
   0.0    1.0   0.0 
   0.0    0.0   1.0
   ${ITK_TEST_OUTPUT_DIR}/HeadMRVolumeWithDirectionIdentity.mhd)

ADD_TEST(itkImageIODirection3DTest02 ${IO_TESTS} itkImageIODirection3DTest
   ${ITK_DATA_ROOT}/Input/HeadMRVolumeWithDirection.mhd  
   0.8660254    0.5         0.0  
  -0.5          0.8660254   0.0 
   0.0          0.0         1.0
   ${ITK_TEST_OUTPUT_DIR}/HeadMRVolumeWithDirection.mhd)

ADD_TEST(itkImageIODirection3DTest03 ${IO_TESTS} itkImageIODirection3DTest
   ${ITK_TEST_OUTPUT_DIR}/HeadMRVolumeWithDirectionIdentity.mhd
   1.0    0.0   0.0 
   0.0    1.0   0.0 
   0.0    0.0   1.0
   ${ITK_TEST_OUTPUT_DIR}/HeadMRVolumeWithDirectionIdentity.nhdr)

ADD_TEST(itkImageIODirection3DTest04 ${IO_TESTS} itkImageIODirection3DTest
   ${ITK_TEST_OUTPUT_DIR}/HeadMRVolumeWithDirection.mhd
   0.8660254    0.5         0.0  
  -0.5          0.8660254   0.0 
   0.0          0.0         1.0
   ${ITK_TEST_OUTPUT_DIR}/HeadMRVolumeWithDirection.nhdr)

ADD_TEST(itkImageIODirection3DTest05 ${IO_TESTS} itkImageIODirection3DTest
   ${ITK_TEST_OUTPUT_DIR}/HeadMRVolumeWithDirectionIdentity.nhdr
   1.0    0.0   0.0 
   0.0    1.0   0.0 
   0.0    0.0   1.0)

ADD_TEST(itkImageIODirection3DTest06 ${IO_TESTS} itkImageIODirection3DTest
   ${ITK_TEST_OUTPUT_DIR}/HeadMRVolumeWithDirection.nhdr
   0.8660254    0.5         0.0  
  -0.5          0.8660254   0.0 
   0.0          0.0         1.0)


ENDIF(ITK_DATA_ROOT)


# Test for reading direction cosines
# Note: Directions are transposed here with respect to the MetaImage header
SET(EXAMPLES_DATA_ROOT "${ITK_SOURCE_DIR}/Examples/Data")
ADD_TEST(itkImageIODirection2DTest01 ${IO_TESTS} itkImageIODirection2DTest
   ${EXAMPLES_DATA_ROOT}/BrainProtonDensitySliceBorder20.png  
   1.0   0.0 
   0.0   1.0
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceBorder20.mhd)

ADD_TEST(itkImageIODirection2DTest02 ${IO_TESTS} itkImageIODirection2DTest
   ${EXAMPLES_DATA_ROOT}/BrainProtonDensitySliceShifted13x17y.png  
   1.0   0.0 
   0.0   1.0
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceShifted13x17y.mhd)  

ADD_TEST(itkImageIODirection2DTest03 ${IO_TESTS} itkImageIODirection2DTest
   ${EXAMPLES_DATA_ROOT}/BrainProtonDensitySliceBorder20DirectionPlus30.mhd
   0.8660254   -0.5  
   0.5   0.8660254
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceBorder20DirectionPlus30.mhd)

ADD_TEST(itkImageIODirection2DTest04 ${IO_TESTS} itkImageIODirection2DTest
   ${EXAMPLES_DATA_ROOT}/BrainProtonDensitySliceShifted13x17yDirectionPlus30.mhd
   0.8660254   -0.5  
   0.5   0.8660254
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceShifted13x17yDirectionPlus30.mhd)

ADD_TEST(itkImageIODirection2DTest05 ${IO_TESTS} itkImageIODirection2DTest
   ${EXAMPLES_DATA_ROOT}/BrainT1SliceBorder20DirectionPlus30.mhd
   0.8660254   -0.5  
   0.5   0.8660254
   ${ITK_TEST_OUTPUT_DIR}/BrainT1SliceBorder20DirectionPlus30.mhd)

# Now verify that we can read those MetaImage files, and find the same Directions
# then write them as Nifti files.
ADD_TEST(itkImageIODirection2DTest06 ${IO_TESTS} itkImageIODirection2DTest
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceBorder20.mhd
   1.0   0.0 
   0.0   1.0
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceBorder20.nhdr)

ADD_TEST(itkImageIODirection2DTest07 ${IO_TESTS} itkImageIODirection2DTest
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceShifted13x17y.mhd
   1.0   0.0 
   0.0   1.0
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceShifted13x17y.nhdr)  

ADD_TEST(itkImageIODirection2DTest08 ${IO_TESTS} itkImageIODirection2DTest
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceBorder20DirectionPlus30.mhd
   0.8660254   -0.5  
   0.5   0.8660254
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceBorder20DirectionPlus30.nhdr)

ADD_TEST(itkImageIODirection2DTest09 ${IO_TESTS} itkImageIODirection2DTest
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceShifted13x17yDirectionPlus30.mhd
   0.8660254   -0.5  
   0.5   0.8660254
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceShifted13x17yDirectionPlus30.nhdr)

ADD_TEST(itkImageIODirection2DTest10 ${IO_TESTS} itkImageIODirection2DTest
   ${ITK_TEST_OUTPUT_DIR}/BrainT1SliceBorder20DirectionPlus30.mhd
   0.8660254   -0.5  
   0.5   0.8660254
   ${ITK_TEST_OUTPUT_DIR}/BrainT1SliceBorder20DirectionPlus30.nhdr)

# Now verify that we can read those Nifti files, and find the same Directions
# then write them as Nifti files.
ADD_TEST(itkImageIODirection2DTest11 ${IO_TESTS} itkImageIODirection2DTest
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceBorder20.nhdr
   1.0   0.0 
   0.0   1.0)

ADD_TEST(itkImageIODirection2DTest12 ${IO_TESTS} itkImageIODirection2DTest
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceShifted13x17y.nhdr
   1.0   0.0 
   0.0   1.0)

ADD_TEST(itkImageIODirection2DTest13 ${IO_TESTS} itkImageIODirection2DTest
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceBorder20DirectionPlus30.nhdr
   0.8660254   -0.5  
   0.5   0.8660254)

ADD_TEST(itkImageIODirection2DTest14 ${IO_TESTS} itkImageIODirection2DTest
   ${ITK_TEST_OUTPUT_DIR}/BrainProtonDensitySliceShifted13x17yDirectionPlus30.nhdr
   0.8660254   -0.5  
   0.5   0.8660254)

ADD_TEST(itkImageIODirection2DTest15 ${IO_TESTS} itkImageIODirection2DTest
   ${ITK_TEST_OUTPUT_DIR}/BrainT1SliceBorder20DirectionPlus30.nhdr
   0.8660254   -0.5  
   0.5   0.8660254)


IF(ITK_BINARY_DIR)
  IF(TCL_TCLSH)
    ADD_TEST(PrintSelf-IO ${TCL_TCLSH}
             ${ITK_SOURCE_DIR}/Utilities/Dart/PrintSelfCheck.tcl  
             ${ITK_SOURCE_DIR}/Code/IO)
  ENDIF(TCL_TCLSH)
ENDIF(ITK_BINARY_DIR)

ENDIF( NOT ITK_DISABLE_CXX_TESTING )


IF( NOT ITK_DISABLE_JAVA_TESTING )
IF(ITK_CSWIG_JAVA AND ITK_BINARY_DIR)
  SET(JAVACLASSPATH ${ITK_BINARY_DIR}/Wrapping/CSwig/Java/InsightToolkit.jar)
  FOREACH(cfgtype ${CMAKE_CONFIGURATION_TYPES})
    SET(JAVACLASSPATH "${JAVACLASSPATH}\\;${ITK_BINARY_DIR}/Wrapping/CSwig/Java/${cfgtype}/InsightToolkit.jar")
  ENDFOREACH(cfgtype)

  FOREACH( javatestfile 
     DicomSliceRead
     )

  ADD_CUSTOM_TARGET(${javatestfile}Java ALL  DEPENDS ${ITK_BINARY_DIR}/Examples/IO/${javatestfile}.class)
  ADD_DEPENDENCIES(${javatestfile}Java ITKJavaJarDummyLibrary)

  ADD_CUSTOM_COMMAND(
    OUTPUT  ${ITK_BINARY_DIR}/Examples/IO/${javatestfile}.class
    DEPENDS ${ITK_SOURCE_DIR}/Examples/IO/${javatestfile}.java
    COMMAND ${JAVA_COMPILE}
    ARGS -classpath "${JAVACLASSPATH}" -d "${ITK_BINARY_DIR}/Examples/IO"
    ${ITK_SOURCE_DIR}/Examples/IO/${javatestfile}.java
    COMMENT "Java Class")

  ENDFOREACH( javatestfile )

  IF(WIN32)
    SET(TMPJAVACLASSPATH ${ITK_BINARY_DIR}/Examples/IO/)
    FOREACH(javadirectory ${JAVACLASSPATH})
      # Set path separator for Windows
      SET(TMPJAVACLASSPATH "${TMPJAVACLASSPATH}\\;${javadirectory}")
    ENDFOREACH(javadirectory)
    SET(JAVACLASSPATH ${TMPJAVACLASSPATH})
  ELSE(WIN32)
    SET(TMPJAVACLASSPATH ${ITK_BINARY_DIR}/Examples/IO/)
    FOREACH(javadirectory ${JAVACLASSPATH})
      # Set path separator for UNIX
      SET(TMPJAVACLASSPATH "${TMPJAVACLASSPATH}:${javadirectory}")
    ENDFOREACH(javadirectory)
    SET(JAVACLASSPATH ${TMPJAVACLASSPATH})
  ENDIF(WIN32)
 
  ADD_TEST(DicomSliceReadJava ${JAVA_RUNTIME} -classpath "${JAVACLASSPATH}"
           DicomSliceRead
           ${ITK_SOURCE_DIR}/Testing/Data/Input/DicomSeries/Image0076.dcm
           ${ITK_TEST_OUTPUT_DIR}/DicomSliceReadJavaTest.png  
           1 )  

ENDIF(ITK_CSWIG_JAVA AND ITK_BINARY_DIR)
ENDIF( NOT ITK_DISABLE_JAVA_TESTING )
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