gdcmdocument.h

DTMK软件开发包,此为开源软件,是一款很好的医学图像开发资源.

/*=========================================================================
 
  Program:   gdcm
  Module:    $RCSfile: gdcmDocument.h,v $
  Language:  C++
  Date:      $Date: 2008-05-14 12:25:32 $
  Version:   $Revision: 1.13 $
 
  Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
  l'Image). All rights reserved. See Doc/License.txt or
  http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
 
     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notices for more information.
 
=========================================================================*/

#ifndef GDCMDOCUMENT_H
#define GDCMDOCUMENT_H

#include "gdcmVR.h"
#include "gdcmDict.h"
#include "gdcmElementSet.h"
#include "gdcmException.h"
#include "gdcmDebug.h"

#include <map>
#include <list>
#include <fstream>

namespace gdcm 
{
class ValEntry;
class BinEntry;
class SeqEntry;
class Dict;

//-----------------------------------------------------------------------------
/**
 * \brief Derived by both gdcm::File and gdcm::DicomDir
 */
class GDCM_EXPORT Document : public ElementSet
{
public:

typedef std::list<Element> ListElements;

// Loading
   //Deprecated : use SetFileName() + Load()
#ifndef GDCM_LEGACY_REMOVE 
   virtual bool Load( std::string const &filename ); 
#endif
   virtual bool Load( ); 

// Dictionaries
   Dict *GetPubDict();
   Dict *GetShaDict();
   bool SetShaDict(Dict *dict);
   bool SetShaDict(DictKey const &dictName);

// Informations contained in the gdcm::Document
   bool IsParsable();
   virtual bool IsReadable();
   bool IsDicomV3();
   bool IsPapyrus();
   FileType GetFileType();
   std::string GetTransferSyntax();
   /// Return the Transfer Syntax as a string
   std::string GetTransferSyntaxName();

// Swap code
   /// 'Swap code' accessor (see \ref SwapCode )
   int GetSwapCode() { return SwapCode; }
   // System access (meaning endian related !?)
   uint16_t SwapShort(uint16_t);
   uint32_t SwapLong(uint32_t);
   /// \brief  Unswaps back the bytes of 2-bytes long integer 
   ///         so they agree with the processor order.
   uint16_t UnswapShort(uint16_t a) { return SwapShort(a);}
   /// \brief  Unswaps back the bytes of 4-byte long integer 
   ///         so they agree with the processor order.
   uint32_t UnswapLong(uint32_t a) { return SwapLong(a);}
   
// File I/O
   /// Accessor to \ref Filename
   const std::string &GetFileName() const { return Filename; }
   /// Accessor to \ref Filename
   virtual void SetFileName(std::string const &fileName) 
                   { if (Filename != fileName)
                        Filename = fileName, IsDocumentModified = true; }

   std::ifstream *OpenFile();
   static bool CanReadFile(std::istream &os, bool &hasPreamble);
   bool CloseFile();
   void WriteContent( std::ofstream *fp, FileType type );

// Content entries
   virtual void LoadEntryBinArea(uint16_t group, uint16_t elem);
   virtual void LoadEntryBinArea(BinEntry *entry);

   void LoadDocEntrySafe(DocEntry *entry);
   void SetMaxSizeLoadEntry(long);
   void AddForceLoadElement(uint16_t group, uint16_t elem);

// Ordering of Documents
   bool operator<(Document &document);

/**
 * \brief Sets the LoadMode as a boolean string.
 *        LD_NOSEQ, LD_NOSHADOW, LD_NOSHADOWSEQ
 ... (nothing more, right now)
 *        WARNING : before using NO_SHADOW, be sure *all* your files
 *        contain accurate values in the 0x0000 element (if any)
 *        of *each* Shadow Group. The parser will fail if the size is wrong !
 * @param   mode Load mode to be used
 */
   void SetLoadMode (int mode) { if (LoadMode != mode)
                                     LoadMode=mode, IsDocumentModified = true; }

// Methods
   // Constructor and destructor are protected to forbid end user
   // to instanciate from this class Document (only gdcm::File and
   // gdcm::DicomDir are meaningfull).
   Document();
   GDCM_LEGACY( Document( std::string const &filename ) )
   virtual ~Document();

protected:
   uint16_t ReadInt16() throw ( FormatError );
   uint32_t ReadInt32() throw ( FormatError );
   void     SkipBytes(uint32_t);
   int ComputeGroup0002Length( );

// Variables
   /// Refering underlying filename.
   std::string Filename;

   /// \brief Swap code gives an information on the byte order of a 
   ///  supposed to be an int32, as it's read on disc 
   /// (depending on the image Transfer Syntax *and* on the processor endianess)
   /// as opposed as it should in memory to be dealt as an int32.
   /// For instance :
   /// - a 'Little Endian' image, read with a little endian processor
   /// will have a SwapCode= 1234 (the order is OK; nothing to do)
   /// - a 'Little Endian' image, read with a big endian procesor
   /// will have a SwapCode= 4321 (the order is wrong; int32 an int16 must be
   /// swapped)
   /// note : values 2143, 4321, 3412 remain for the ACR-NEMA time, and
   /// the well known 'Bad Big Endian' and 'Bad Little Endian' codes
   int SwapCode;

   ///\brief whether we already parsed group 0002 (Meta Elements)
   bool Group0002Parsed;

   ///\brief whether file has a DCM Preamble
   bool HasDCMPreamble;

   /// File Pointer, opened during Document parsing.
   std::ifstream *Fp;

   /// ACR, ACR_LIBIDO, ExplicitVR, ImplicitVR, Unknown
   FileType Filetype;  

   /// After opening the file, we read HEADER_LENGTH_TO_READ bytes.
   //static const unsigned int HEADER_LENGTH_TO_READ; 
   /// \brief Elements whose value is longer than MAX_SIZE_LOAD_ELEMENT_VALUE
   /// are NOT loaded.
   static const unsigned int MAX_SIZE_LOAD_ELEMENT_VALUE;

   /// User supplied list of elements to Anonymize
   ListElements UserAnonymizeList;

   /// User supplied list of elements to force Load
   ListElements UserForceLoadList;

protected:
   /// \brief Bit string integer (each one considered as a boolean)
   ///        Bit 0 : Skip Sequences,    if possible
   ///        Bit 1 : Skip Shadow Groups if possible
   ///        Probabely, some more to add
   int LoadMode;
   
   /// \brief Whether the gdcm::Document is already parsed/loaded :
   /// False from the creation of the gdcm::Document untill 
   ///   gdcm::Document:Load()
   bool IsDocumentAlreadyLoaded; // FIXME : probabely useless now

   /// Whether the gdcm::Document was modified since the last Load()
   bool IsDocumentModified;

private:
// Methods
   void Initialize();
   bool DoTheLoadingDocumentJob();
   // Read
   void ParseDES(DocEntrySet *set, long offset, long l_max, bool delim_mode);
   void ParseSQ (SeqEntry *seq,    long offset, long l_max, bool delim_mode);

   void LoadDocEntry         (DocEntry *e, bool forceLoad = false);
   void FindDocEntryLength   (DocEntry *e, std::string vr) throw ( FormatError );
   uint32_t FindDocEntryLengthOBOrOW() throw( FormatUnexpected );
   std::string FindDocEntryVR();
   bool CheckDocEntryVR      (VRKey k);

   std::string GetDocEntryValue  (DocEntry *entry);
   std::string GetDocEntryUnvalue(DocEntry *entry);

   void SkipDocEntry          (DocEntry *entry);
   void SkipToNextDocEntry    (DocEntry *entry);

   void FixDocEntryFoundLength(DocEntry *entry, uint32_t l);
   bool IsDocEntryAnInteger   (DocEntry *entry);

   bool CheckSwap();
   void SwitchByteSwapCode();

   // DocEntry related utilities
   DocEntry *ReadNextDocEntry();

   void HandleBrokenEndian  (uint16_t &group, uint16_t &elem);
   void HandleOutOfGroup0002(uint16_t &group, uint16_t &elem);
   DocEntry *Backtrack(DocEntry *docEntry);

// Variables
   /// Public dictionary used to parse this header
   Dict *RefPubDict;
   /// \brief Optional "shadow dictionary" (private elements) used to parse
   /// this header
   Dict *RefShaDict;

   /// \brief Size threshold above which an element value will NOT be loaded
   /// in memory (to avoid loading the image/volume itself). By default,
   /// this upper bound is fixed to 1024 bytes (which might look reasonable
   /// when one considers the definition of the various VR contents).
   uint32_t MaxSizeLoadEntry;

//  uint32_t GenerateFreeTagKeyInGroup(uint16_t group);
//  void BuildFlatHashTableRecurse( TagDocEntryHT &builtHT,
//                                  DocEntrySet *set );

};

} // end namespace gdcm

//-----------------------------------------------------------------------------
#endif