u_test.m

GNU Octave is a high-level language, primarily intended for numerical computations. It provides a c

## Copyright (C) 1995, 1996, 1997  Kurt Hornik
## 
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundation; either version 2, or (at your option)
## any later version.
## 
## This program is distributed in the hope that it will be useful, but
## WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
## General Public License for more details. 
## 
## You should have received a copy of the GNU General Public License
## along with this file.  If not, write to the Free Software Foundation,
## 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.

## usage:  [pval, z] = u_test (x, y [, alt])
##
## For two samples x and y, perform a Mann-Whitney U-test of the null
## hypothesis PROB(x > y) == 1/2 == PROB(x < y).  Under the null, the
## test statistic z approximately follows a standard normal
## distribution.  Note that this test is equivalent to the Wilcoxon
## rank-sum test.
##
## With the optional argument string alt, the alternative of interest
## can be selected.  
## If alt is "!=" or "<>", the null is tested against the two-sided
## alternative PROB(x > y) != 1/2.
## If alt is ">", the one-sided alternative PROB(x > y) > 1/2 is
## considered, similarly for "<".  
## The default is the two-sided case.
##
## pval is the p-value of the test.
##  
## If no output argument is given, the p-value of the test is displayed.
  
## This implementation is still incomplete---for small sample sizes,
## the normal approximation is rather bad ...

## Author:  KH <[e-mail]>
## Description:  Mann-Whitney U-test

function [pval, z] = u_test (x, y, alt)
  
  if ((nargin < 2) || (nargin > 3))
    usage ("[pval, z] = u_test (x, y [, alt])");
  endif
    
  if (! (is_vector (x) && is_vector (y)))
    error ("u_test:  both x and y must be vectors");
  endif

  n_x  = length (x);
  n_y  = length (y);
  r    = ranks ([(reshape (x, 1, n_x)), (reshape (y, 1, n_y))]);
  z    = (sum (r(1 : n_x)) - n_x * (n_x + n_y + 1) / 2) ...
           / sqrt (n_x * n_y * (n_x + n_y + 1) / 12);  

  cdf  = stdnormal_cdf (z);
  
  if (nargin == 2)
    alt  = "!=";
  endif

  if (! isstr (alt))
    error("u_test:  alt must be a string");
  endif
  if (strcmp (alt, "!=") || strcmp (alt, "<>"))
    pval = 2 * min (cdf, 1 - cdf);
  elseif (strcmp (alt, ">"))
    pval = cdf;
  elseif (strcmp (alt, "<"))
    pval = 1 - cdf;
  else
    error (sprintf ("u_test:  option %s not recognized", alt));
  endif

  if (nargout == 0)
    printf ("  pval:  %g\n", pval);
  endif
  
endfunction