protsetupdate.hpp

模糊聚類分析源碼。包含教學文件

/*
  
  Context       : Fuzzy Clustering Algorithms

  Author        : Frank Hoeppner, see also AUTHORS file 

  Description   : header of class ProtSetUpdate
                  
  History       : see source file

  Comment       : 
    This file was generated automatically. DO NOT EDIT.

  Copyright     : Copyright (C) 1999-2000 Frank Hoeppner

    This program is free software; you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation; either version 2 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program; if not, write to the Free Software
    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
*/
/*
  The University of Applied Sciences Oldenburg/Ostfriesland/Wilhelmshaven
  hereby disclaims all copyright interests in the program package `fc' 
  (tool package for fuzzy cluster analysis) written by Frank Hoeppner.
  
  Prof. Haass, President of Vice, 2000-Mar-10
*/

#ifndef ProtSetUpdate_HEADER
#define ProtSetUpdate_HEADER

/* configuration include */
#ifdef HAVE_CONFIG_H
/*
//FILETREE_IFDEF HAVE_CONFIG_H
*/
#include "config.h"
/*
//FILETREE_ENDIF
*/
#endif



// necessary includes
#include "ddl.hpp"
#include "algorithm.hpp"
#include "FlattenHierarchy.hpp"
#include "StoreAnalysis.hpp"
#include "ReadDDLStream.hpp"
#include "WriteDDLStream.hpp"
#include "ProbMembUpdate.hpp"
#include "AutoMembUpdate.hpp"
#include "ProtSetDistance.hpp"
#include "AltOptLoop.cpp"
// GK
#include "GKUpdate.hpp"
// HCCL
#include "PartialKnotUpdate.cpp"
//#define INLINE inline

// global types, constants, definitions


// class definition
template < class ANALYSIS >
class ProtSetUpdate
  : public Algorithm<ANALYSIS>
  {
  
  public:
    typedef typename ANALYSIS::opt_type opt_type;
    typedef typename ANALYSIS::data_type data_type;
    typedef typename ANALYSIS::prot_type prot_type;
    typedef typename ANALYSIS::link_type link_type;

    typedef typename ANALYSIS::data_set_type data_set_type;
    typedef typename ANALYSIS::prot_set_type prot_set_type;
    typedef typename ANALYSIS::link_set_type link_set_type;

    typedef typename ANALYSIS::data_iter data_iter;
    typedef typename ANALYSIS::prot_iter prot_iter;
    typedef typename ANALYSIS::link_iter link_iter;
    ProtSetUpdate(Algorithm<flat_analysis_type> *ap_clus_alg,
                      Algorithm<ANALYSIS> *ap_alg);
    ~ProtSetUpdate();
    virtual void operator()(ANALYSIS&);
    
  protected:
    
    
    
  private:
    
    
    Algorithm<ANALYSIS>* mp_succ_alg;
    Algorithm<flat_analysis_type>* mp_clus_alg;
    FlattenHierarchy<ANALYSIS>* mp_flat_alg;
    opt_type m_local_option;
    data_set_type m_flat_data;
    prot_set_type m_empty_prot;
    link_set_type m_flat_links;
    
  };

// class related functions and definitions
template <class CLUSTERALG,class ALGORITHM> 
inline ProtSetUpdate<typename ALGORITHM::input_type>* 
psupdate(CLUSTERALG *c,ALGORITHM *a)
  { return new ProtSetUpdate<typename ALGORITHM::input_type>(c,a); }
template <class ALGORITHM> 
inline AltOptLoop<typename ALGORITHM::input_type>*
fcplf(ALGORITHM* a)
  {
  typedef NoOperation<typename ALGORITHM::input_type> noop_type;

  return new AltOptLoop<typename ALGORITHM::input_type>(
    FC_DEPTH_SET,
    psupdate(uhccl(flat_nop()),tree_nop()),
    psdist(uhccl(tree_nop()),autom(tree_nop())),
    ddlwrite(cout,tree_nop(),false),
    "fcplf",a); 
  }

/* inline implementation */




#endif // ProtSetUpdate_HEADER