📄 protsetupdate.cpp
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/* Context : Fuzzy Clustering Algorithms Author : Frank Hoeppner, see also AUTHORS file Description : implementation of class module ProtSetUpdate History : Comment : This file was generated automatically. DO NOT EDIT. Copyright : Copyright (C) 1999-2000 Frank Hoeppner This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA*//* The University of Applied Sciences Oldenburg/Ostfriesland/Wilhelmshaven hereby disclaims all copyright interests in the program package `fc' (tool package for fuzzy cluster analysis) written by Frank Hoeppner. Prof. Haass, President of Vice, 2000-Mar-10*/#ifndef ProtSetUpdate_SOURCE#define ProtSetUpdate_SOURCE/* configuration include */#ifdef HAVE_CONFIG_H/*//FILETREE_IFDEF HAVE_CONFIG_H*/#include "config.h"/*//FILETREE_ENDIF*/#endif// necessary includes#include "ProtSetUpdate.hpp"// data// implementationtemplate < class ANALYSIS >ProtSetUpdate< ANALYSIS >::ProtSetUpdate ( Algorithm<flat_analysis_type> *ap_clus_alg, Algorithm<ANALYSIS> *ap_alg ) : mp_succ_alg(ap_alg) , mp_clus_alg(ap_clus_alg) , mp_flat_alg(flat(flat_nop())) { }template < class ANALYSIS >ProtSetUpdate< ANALYSIS >::~ProtSetUpdate ( ) { FUNCLOG("~ProtSetUpdate"); delete mp_succ_alg; }template < class ANALYSIS >voidProtSetUpdate< ANALYSIS >::operator() ( ANALYSIS& a_analysis ) { FUNCLOG("ProtSetUpdate"); m_local_option = a_analysis.option(); (*mp_flat_alg)(a_analysis); m_local_option.interim_output() = DEFAULT_OPTION_NOINTERIMOUT; if (m_local_option.max_iterations()<=0) m_local_option.max_iterations() = DEFAULT_OPTION_MAXITER; // full run m_local_option.number_features() = mp_flat_alg->analysis().option().number_features(); if (m_local_option.data_depth()!=FC_DEPTH_ANY) m_local_option.data_depth() -= 1; if (m_local_option.prot_depth()!=FC_DEPTH_ANY) m_local_option.prot_depth() -= 1; int p(0); for ( typename ANALYSIS::prot_iter i_prot(a_analysis.prototypes().begin()); i_prot != a_analysis.prototypes().end(); ++i_prot ) { flat_analysis_type flat_analysis(&m_local_option,&(mp_flat_alg->analysis().data()),&(*i_prot).hierarchy(),&m_flat_links); m_local_option.number_prototypes() = (*i_prot).hierarchy().size(); adjust_set_size(m_flat_links,m_local_option.number_features()* m_local_option.number_prototypes()); m_local_option.weight_factor() = Selector(SELECT_PMEM,p); for (flat_analysis_type::data_iter i_data(flat_analysis.data().begin()); i_data != flat_analysis.data().end(); ++i_data) { (*i_data).recalc_weight_factor(m_local_option.weight_factor()); } (*mp_clus_alg)(flat_analysis); // write local analysis into trace stream; use different analysis name // then the save tool divides them up correctly if (m_local_option.interim_output()!=DEFAULT_OPTION_NOINTERIMOUT) { m_local_option.analysis_name() = a_analysis.option().analysis_name(); m_local_option.analysis_name() += ".cluster"; m_local_option.analysis_name() += p; run(ddlwrite(cout,flat_nop(),false),flat_analysis); } ++p; } (*mp_succ_alg)(a_analysis); }// template instantiation#endif // ProtSetUpdate_SOURCE
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