makefile.pvm4

序列对齐 Compare a protein sequence to a protein sequence database or a DNA sequence to a DNA sequenc

#
# $Name: fa35_03_06 $ - $Id: Makefile.pvm4,v 1.39 2007/12/13 14:38:19 wrp Exp $
#
# generic PVM3 Makefile without altivec or SSE2 acceleration for Smith-Waterman
#

#CC=/opt/parasoft/bin.linux2/insure -g -DDEBUG
#CC= cc -O -ggdb -DDEBUG
#CC= cc -ggdb -O3 -falign-loops=32 -mcpu=7450 -DMacOSX -faltivec
#CC= gcc -g  -O -msse2 -ffast-math
CC= gcc -g  -O3

NCC= cc -O3 -g
#NCC= cc -g -falign-loops=32 -O3 -mcpu=7450 -DMacOSX -faltivec -DSW_ALTIVEC
#NCC= gcc -g  -O -DSW_SSE2 -msse2 -ffast-math
#ARCH   =       NETBSDPOWERPC

PLIB    =       ${PVM_ROOT}/lib/$(ARCH)/libpvm3.a
XDIR    =       /home/slib/pvm3/bin/$(ARCH)
#XDIR    =       /wrpx00.p0/users/wrp/pvm3/bin/$(ARCH)
SDIR    =       .
PVMSRC  =	${PVM_ROOT}/src

CFLAGS= -DPVM_SRC -DUNIX -DPCOMPLIB -DBFR=1200 -I${PVM_ROOT}/include -DSRAND=srandom -DRAND=random -DHAS_INTTYPES  -DSAMP_STATS -DSHOWSIM

HFLAGS= -o
NFLAGS= -o

#NCBL_LIB=ncbl2_mlib.o mysql_lib.o
NCBL_LIB=ncbl2_mlib.o
#LIB_M= -L/usr/lib/mysql -lmysqlclient -lm -lz
LIB_M=  -lm
LIB_WM= -lm

# standard nxgetaa, no memory mapping for 0 - 6
#LGETLIB=lgetlib.o
#NGETLIB=nmgetlib

# memory mapping for 0FASTA, 5PIRVMS, 6GCGBIN
LGETLIB=lgetlib.o lgetaa_m.o
NGETLIB=nmgetlib

NRAND=nrandom

# set up files for SSE2/Altivec acceleration
#
include Makefile.sse_alt

# no acceleration
#
DROPGSW_O = $(DROPGSW_NA_O)

# common pv35comp programs
include Makefile.pvcom

# common *.o files for all environments
include Makefile.fcom