makefile.nm_pcom

序列对齐 Compare a protein sequence to a protein sequence database or a DNA sequence to a DNA sequenc

# combinations of files for "composite" drop* functions
#
DROPLNW_O = droplnw.obj wm_align.obj calcons_sw.obj
DROPGNW_O = dropgnw.obj wm_align.obj calcons_sw.obj
DROPNFA_O = drop_nfa.obj wm_align.obj calcons_fa.obj
DROPTFA_O = drop_tfa.obj
DROPFF_O = drop_ff2.obj calcons_ff.obj
DROPFS_O = drop_fs2.obj calcons_fs.obj
DROPFM_O = drop_fm.obj calcons_fm.obj
DROPTFF_O = drop_tff.obj calcons_tff.obj
DROPTFS_O = drop_tfs.obj calcons_tfs.obj
DROPTFM_O = drop_tfm.obj calcons_tfm.obj

SHOWBESTC = mshowbest.c
SHOWALIGN = mshowalign
LSHOWALIGN = lshowalign
MWH = mw.h 
MWHP = mw.h

TPROGS = ssearch35_t.exe ssearch35sse2_t.exe fasta35_t.exe fasts35_t.exe fastx35_t.exe tfastx35_t.exe fasty35_t.exe tfasty35_t.exe tfasts35_t.exe fastm35_t.exe fastf35_t.exe tfastf35_t.exe ggsearch35_t.exe glsearch35_t.exe

SPROGS = fasta35.exe ssearch35.exe ssearch35sse2.exe fasts35.exe fastx35.exe tfastx35.exe fasty35.exe tfasty35.exe tfasts35.exe fastm35.exe tfastm35.exe fastf35.exe tfastf35.exe lalign35.exe ggsearch35.exe glsearch35.exe

MAPROGS = map_db.exe

XTPROGS = fastx35_t.exe tfastx35_t.exe fasty35_t.exe tfasty35_t.exe
XPROGS = fastx35.exe tfastx35.exe .exe fasty35 tfasty35.exe

PROGS = $(SPROGS) $(TPROGS)

all : $(PROGS)

tall: $(TPROGS)

sall: $(SPROGS)

xall: $(XTPROGS) $(XPROGS) $(ZTPROGS) $(ZPROGS) 

clean-up:
	del *.obj $(PROGS)

install: $(PROGS)
	copy $(PROGS) $(XDIR)

sinstall: $(SPROGS)
	copy $(SPROGS) $(XDIR)

tinstall: $(TPROGS)
	cp $(TPROGS) $(XDIR)

fasta35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj scale_se.obj karlin.obj $(DROPNFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
	$(CL) /Fefasta35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj $(DROPNFA_O) scale_se.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj

fastx35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fx.obj scale_se.obj karlin.obj drop_fx.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
	$(CL) /Fefastx35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fx.obj drop_fx.obj scale_se.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj

fasty35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fy.obj scale_se.obj karlin.obj drop_fz.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
	$(CL) /Fefasty35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fy.obj drop_fz.obj scale_se.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj

fastf35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswts.obj last_tat.obj tatstats_ff.obj karlin.obj $(DROPFF_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
	$(CL) /Fefastf35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj $(DROPFF_O) scaleswts.obj last_tat.obj tatstats_ff.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj

fastf35u : $(COMP_LIBO) compacc.obj showun.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswtf.obj karlin.obj $(DROPFF_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
	$(CL) /Fefastf35u.exe $(COMP_LIBO) compacc.obj showun.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj $(DROPFF_O) scaleswtf.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj

fastf35s : $(COMP_LIBO) compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswtf.obj karlin.obj $(DROPFF_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
	$(CL) /Fefastf35s.exe $(COMP_LIBO) compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj $(DROPFF_O) scaleswtf.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj

fasts35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj $(DROPFS_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
	$(CL) /Fefasts35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj $(DROPFS_O) scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj

fastm35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fm.obj scaleswts.obj last_tat.obj tatstats_fm.obj karlin.obj $(DROPFM_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
	$(CL) /Fefastm35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fm.obj $(DROPFM_O) scaleswts.obj last_tat.obj tatstats_fm.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj

tfastx35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfx.obj scale_se.obj karlin.obj drop_tfx.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
	$(CL) /Fetfastx35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfx.obj drop_tfx.obj scale_se.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj

tfasty35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfy.obj scale_se.obj karlin.obj drop_tfz.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
	$(CL) /Fetfasty35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfy.obj drop_tfz.obj scale_se.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj

tfastf35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj $(DROPTFF_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
	$(CL) /Fetfastf35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj $(DROPTFF_O) scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj

tfastf35s : $(COMP_LIBO) compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj scaleswtf.obj karlin.obj $(DROPTFF_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
	$(CL) /Fetfastf35s.exe $(COMP_LIBO) compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj $(DROPTFF_O) scaleswtf.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj

tfasts35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfs.obj scaleswts.obj tatstats_fs.obj last_tat.obj karlin.obj $(DROPTFS_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
	$(CL) /Fetfasts35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfs.obj $(DROPTFS_O) scaleswts.obj tatstats_fs.obj last_tat.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj

tfastm35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfm.obj scaleswts.obj tatstats_fm.obj last_tat.obj karlin.obj $(DROPTFM_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
	$(CL) /Fetfastm35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfm.obj $(DROPTFM_O) scaleswts.obj tatstats_fm.obj last_tat.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj

ssearch35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scale_se.obj karlin.obj $(DROPGSW_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
	$(CL) /Fessearch35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj $(DROPGSW_O) scale_se.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj

ggsearch35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_gnw.obj scale_sn.obj karlin.obj $(DROPGNW_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
	$(CL) /Feggsearch35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_gnw.obj $(DROPGNW_O) scale_sn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj

glsearch35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_lnw.obj scale_sn.obj karlin.obj $(DROPLNW_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
	$(CL) /Feglsearch35.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_lnw.obj $(DROPLNW_O) scale_sn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj

lalign35.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(LSHOWALIGN).obj htime.obj apam.obj doinit.obj init_lal.obj scale_se.obj karlin.obj last_thresh.obj $(DROPLAL_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj