makefile.pvm4_sse2

序列对齐 Compare a protein sequence to a protein sequence database or a DNA sequence to a DNA sequenc

#
# $Name: fa35_03_06 $ - $Id: Makefile.pvm4_sse2,v 1.5 2008/04/08 14:02:21 wrp Exp $
#
# tested with pvm3.4.beta7 and pvm3.3.11.  Tested on DEC Alpha, x86
# and Alpha LINUX for DEC/Compaq Alpha/LINUX
#

#CC=/usr/local/parasoft/bin/insure -g -DDEBUG
CC= cc -O -ggdb -msse2 -ffast-math
#CC= cc -DDEBUG -ggdb -msse2 -ffast-math -DSW_SSE2


#NCC= cc -O3 -ggdb 
NCC= cc -O -ggdb -msse2 -ffast-math

PLIB    =       ${PVM_ROOT}/lib/$(ARCH)/libpvm3.a
#XDIR    =       /home/slib/pvm3/bin/$(ARCH)
XDIR    =       /rdhome/users/wrp/pvm3/bin/$(ARCH)
SDIR    =       .
PVMSRC  =	${PVM_ROOT}/src

CFLAGS= -DPVM_SRC -DUNIX -DPCOMPLIB -DBFR=1200 -I${PVM_ROOT}/include -DSRAND=srandom -DRAND=random -DHAS_INTTYPES  -DSAMP_STATS -DSHOWSIM

HFLAGS= -o
NFLAGS= -o

#NCBL_LIB=ncbl2_mlib.o mysql_lib.o
NCBL_LIB=ncbl2_mlib.o
#LIB_M= -L/usr/lib/mysql -lmysqlclient -lm -lz
LIB_M=  -lm
LIB_WM= -lm

# standard nxgetaa, no memory mapping for 0 - 6
#LGETLIB=lgetlib.o
#NGETLIB=nmgetlib

# memory mapping for 0FASTA, 5PIRVMS, 6GCGBIN
LGETLIB=lgetlib.o lgetaa_m.o
NGETLIB=nmgetlib

NRAND=nrandom

# set up files for SSE2/Altivec acceleration
#
include Makefile.sse_alt

# no acceleration
#
DROPGSW_O = $(DROPGSW_SSE_O)
DROPLAL_O = $(DROPLAL_SSE_O)

# common pv35comp programs
include Makefile.pvcom

# common *.o files for all environments
include Makefile.fcom