a_mark.h

序列对齐 Compare a protein sequence to a protein sequence database or a DNA sequence to a DNA sequenc

/* a_mark.h - symbols used to indicate match/mismatch alignment code */

/* copyright (c) 2003 William R. Pearson and the U. of Virginia */

/* $Name: fa35_03_06 $ - $Id: a_mark.h,v 1.2 2007/12/13 14:38:19 wrp Exp $ */

#define M_BLANK 0
#define M_NEG 1
#define M_ZERO 2
#define M_POS 3
#define M_IDENT 4
#define M_DEL 5

#define MX_A0 0
#define MX_A1 1
#define MX_A2 2
#ifdef M10_CONS_L
#define MX_A10 3
#else
#define MX_A10 4
#endif
#define MX_ACC 5

static char *
aln_map_sym[] = {"  ..: ",	/* 0 */
		 " Xxx  ",	/* 1 */
		 "    . ",	/* 2 */
		 " mzp=-",	/* 3: 10a */
		 "  ..:-",	/* 4: 10b */
		 " <>>=-"	/* 5: calc_code */
		  };