makefile.mpi4_altivec

序列对齐 Compare a protein sequence to a protein sequence database or a DNA sequence to a DNA sequenc

#
# $Name: fa35_03_06 $ - $Id: Makefile.mpi4_altivec,v 1.2 2007/12/13 14:38:19 wrp Exp $
#
# 21 July, 2000
#
# Makefile for MPI versions of the parallel library comparison programs.
# this file is derived from Makefile.pvm, with only a few differences:
# (1) -DMPI_SRC instead of -DPVM_SRC
# (2) programs are mp35comp*, ms35comp*, and mu35comp* rather than pv35comp*, etc.
# (3) MPI does not require/allow a "worker" program, thus no c3.work*
#

# setenv MPI_CC gcc-3.3 for best performance

MPI_ROOT = /m0/xshare/mpich2
MPICC = ${MPI_ROOT}/bin/mpicc

CC= ${MPICC} -g -falign-loops=32 -O3 -mcpu=7450 -faltivec -DSW_ALTIVEC
NCC= ${MPICC} -g -falign-loops=32 -O3 -mcpu=7450 -faltivec -DSW_ALTIVEC
LCC= ${MPICC}

#ARCH   =       ALPHAMP  (get from $ARCH)

PLIB    =       -L${MPI_ROOT}/lib -lmpich
XDIR    =       /home/slib/mpi/bin/
SDIR    =       .

CFLAGS= -DMPI_SRC -DUNIX -DPCOMPLIB -DBFR=120 -DSHOWSIM -I${MPI_ROOT}/include -DSRAND=srand -DRAND=random -DHAS_INTTYPES -DSAMP_STATS -DSW_ALTIVEC
# -DMYSQL_DB -I/usr/include/mysql
# -DSFCHAR="'|'" -DSUPERFAMNUM 

# standard nxgetaa, no memory mapping for 0 - 6
#LGETLIB=getseq.o lgetlib.o
#NGETLIB=nmgetlib

# memory mapping for 0FASTA, 5PIRVMS, 6GCGBIN
LGETLIB=getseq.o lgetlib.o lgetaa_m.o
NGETLIB=nmgetlib

NRAND=nrandom

SHOWBESTC = mshowbest.c
SHOWALIGN = mshowalign
MWH = p_mw.h
MWHP = p_mw.h w_mw.h

#NCBL_LIB=ncbl2_mlib.o mysql_lib.o
NCBL_LIB=ncbl2_mlib.o
#LIB_M= -L/usr/lib/mysql -lmysqlclient -lz -lm
LIB_M= -lm

LFLAGS= -o

# set up files for SSE2/Altivec acceleration
#
include Makefile.sse_alt

# no acceleration
#
DROPGSW_O = $(DROPGSW_ALT_O)

include Makefile.mpcom

include Makefile.fcom