makefile.mpcom

序列对齐 Compare a protein sequence to a protein sequence database or a DNA sequence to a DNA sequenc

DROPLNW_O = droplnw.o wm_align.o calcons_sw.o
DROPGNW_O = dropgnw.o wm_align.o calcons_sw.o
DROPNFA_O = drop_nfa.o wm_align.o calcons_fa.o
DROPTFA_O = drop_tfa.o
DROPFF_O = drop_ff2.o calcons_ff.o
DROPFS_O = drop_fs2.o calcons_fs.o
DROPFM_O = drop_fm.o calcons_fm.o
DROPTFF_O = drop_tff.o calcons_tff.o
DROPTFS_O = drop_tfs.o calcons_tfs.o
DROPTFM_O = drop_tfm.o calcons_tfm.o

PROGS= mp35compfa mp35compsw mp35compfx mp35comptfx mp35compfy mp35comptfy mp35compfs mp35comptfs

# ms35compfa, etc provides a summaries of effectiveness, require
# superfamily annotated database. ms35compss uses dropnsw.c instead of
# dropgsw.c, thus allowing high gap penalties.

all : $(PROGS)

# sall and uall require -DSUPERFAMNUM in main Makefile.mpi*

SPROGS = ms35compfa ms35compsw ms35compss ms35compfx ms35compfy ms35comptfx ms35comptfy

# report highest unrelated sequences
UPROGS = mu35compfa mu35compsw mu35compfx mu35comptfx mu35compfy mu35comptfy
uall : $(UPROGS)

sall : $(SPROGS)


clean-up:
	rm -f *.o $(PROGS) $(WPROGS) $(SPROGS) $(UPROGS)

install : $(PROGS) $(WPROGS)
	cp $(PROGS) $(WPROGS) $(XDIR)

sinstall : $(SPROGS) $(WPROGS)
	cp $(SPROGS) $(WPROGS) $(XDIR)

uinstall : $(UPROGS) $(WPROGS)
	cp $(UPROGS) $(WPROGS) $(XDIR)

mp35compfa : p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fa.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o $(DROPNFA_O) workacc.o faatran.o $(NRAND).o
	$(LCC) $(LFLAGS) mp35compfa p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fa.o scaleswn.o karlin.o c_dispn.o  p2_workcomp2.o $(DROPNFA_O) workacc.o faatran.o $(NRAND).o $(PLIB) $(LIB_M)

ms35compfa : p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fa.o scaleswn.o karlin.o p2_workcomp2.o $(DROPNFA_O) workacc.o faatran.o $(NRAND).o
	$(LCC) $(LFLAGS) ms35compfa p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fa.o scaleswn.o karlin.o p2_workcomp2.o $(DROPNFA_O) workacc.o faatran.o $(NRAND).o $(PLIB) $(LIB_M)

mu35compfa : p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fa.o scaleswn.o karlin.o p2_workcomp2.o $(DROPNFA_O) workacc.o faatran.o $(NRAND).o c_dispn.o
	$(LCC) $(LFLAGS) mu35compfa p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fa.o scaleswn.o karlin.o p2_workcomp2.o $(DROPNFA_O) workacc.o faatran.o $(NRAND).o c_dispn.o $(PLIB) $(LIB_M)

mr35compfa : p2_complib2.o compacc.o lib_sel.o url_subs.o manshowrel.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fa.o scaleswn.o karlin.o p2_workcomp2.o $(DROPNFA_O) workacc.o faatran.o $(NRAND).o
	$(LCC) $(LFLAGS) mr35compfa p2_complib2.o compacc.o lib_sel.o url_subs.o manshowrel.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fa.o scaleswn.o karlin.o p2_workcomp2.o $(DROPNFA_O) workacc.o faatran.o $(NRAND).o $(PLIB) $(LIB_M)

mp35compsw : p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o pssm_asn_subs.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_sw.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o $(DROPGSW_O) workacc.o faatran.o $(NRAND).o
	$(LCC) $(LFLAGS) mp35compsw p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o pssm_asn_subs.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_sw.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o $(DROPGSW_O) workacc.o faatran.o $(NRAND).o $(PLIB) $(LIB_M)

ms35compsw : p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o pssm_asn_subs.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_sw.o scaleswn.o karlin.o p2_workcomp2.o $(DROPGSW_O) workacc.o faatran.o $(NRAND).o
	$(LCC) $(LFLAGS) ms35compsw p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o pssm_asn_subs.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_sw.o scaleswn.o karlin.o p2_workcomp2.o $(DROPGSW_O) workacc.o faatran.o $(NRAND).o $(PLIB) $(LIB_M)

mu35compsw : p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o pssm_asn_subs.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_sw.o scaleswn.o karlin.o p2_workcomp2.o $(DROPGSW_O) workacc.o faatran.o $(NRAND).o c_dispn.o
	$(LCC) $(LFLAGS) mu35compsw p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o pssm_asn_subs.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_sw.o scaleswn.o karlin.o p2_workcomp2.o $(DROPGSW_O) workacc.o faatran.o $(NRAND).o c_dispn.o $(PLIB) $(LIB_M)

mp35compss : p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_sw.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o dropnsw.o workacc.o faatran.o $(NRAND).o
	$(LCC) $(LFLAGS) mp35compss p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_sw.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o dropnsw.o workacc.o faatran.o $(NRAND).o $(PLIB) $(LIB_M)

ms35compss : p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_sw.o scaleswn.o karlin.o p2_workcomp2.o dropnsw.o workacc.o faatran.o $(NRAND).o
	$(LCC) $(LFLAGS) ms35compss p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_sw.o scaleswn.o karlin.o p2_workcomp2.o dropnsw.o workacc.o faatran.o $(NRAND).o $(PLIB) $(LIB_M)

mu35compss : p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_sw.o scaleswn.o karlin.o p2_workcomp2.o dropnsw.o workacc.o faatran.o $(NRAND).o c_dispn.o
	$(LCC) $(LFLAGS) mu35compss p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_sw.o scaleswn.o karlin.o p2_workcomp2.o dropnsw.o workacc.o faatran.o $(NRAND).o c_dispn.o $(PLIB) $(LIB_M)

mp35compfx : p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fx.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_fx.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) mp35compfx p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fx.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_fx.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

ms35compfx : p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fx.o scaleswn.o karlin.o p2_workcomp2.o drop_fx.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) ms35compfx p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fx.o scaleswn.o karlin.o p2_workcomp2.o drop_fx.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

mu35compfx : p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fx.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_fx.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) mu35compfx p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fx.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_fx.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

mp35compfy : p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fy.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_fz.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) mp35compfy p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fy.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_fz.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

ms35compfy : p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fy.o scaleswn.o karlin.o p2_workcomp2.o drop_fz.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) ms35compfy p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fy.o scaleswn.o karlin.o p2_workcomp2.o drop_fz.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

mu35compfy : p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fy.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_fz.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) mu35compfy p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fy.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_fz.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

mp35compfs : p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fs.o scaleswts.o tatstats_fs.o last_tat.o karlin.o c_dispn.o p2_workcomp2.o $(DROPFS_O) workacc.o faatran.o $(NRAND).o
	$(LCC) $(LFLAGS) mp35compfs p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fs.o scaleswts.o tatstats_fs.o last_tat.o karlin.o c_dispn.o p2_workcomp2.o $(DROPFS_O) workacc.o faatran.o $(NRAND).o $(PLIB) $(LIB_M)

mp35comptfs : p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfs.o scaleswts.o tatstats_fs.o last_tat.o karlin.o c_dispn.o p2_workcomp2.o drop_tfs.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) mp35comptfs p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_fs.o scaleswts.o tatstats_fs.o last_tat.o karlin.o c_dispn.o p2_workcomp2.o drop_fz.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

mp35comptfx : p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfx.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_tfx.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) mp35comptfx p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfx.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_tfx.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

ms35comptfx : p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfx.o scaleswn.o karlin.o p2_workcomp2.o drop_tfx.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) ms35comptfx p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfx.o scaleswn.o karlin.o p2_workcomp2.o drop_tfx.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

mu35comptfx : p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfx.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_tfx.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) mu35comptfx p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfx.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_tfx.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

mp35comptfy : p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfy.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_tfz.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) mp35comptfy p2_complib2.o compacc.o lib_sel.o url_subs.o showbest.o $(SHOWALIGN).o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfy.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_tfz.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

ms35comptfy : p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfy.o scaleswn.o karlin.o p2_workcomp2.o drop_tfz.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) ms35comptfy p2_complib2.o compacc.o lib_sel.o url_subs.o showsum.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfy.o scaleswn.o karlin.o p2_workcomp2.o drop_tfz.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

mu35comptfy : p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfy.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_tfz.o workacc.o $(NRAND).o faatran.o
	$(LCC) $(LFLAGS) mu35comptfy p2_complib2.o compacc.o lib_sel.o url_subs.o showun.o $(SHOWALIGN)_u.o htime.o hostacc.o $(LGETLIB) $(NCBL_LIB) apam.o doinit.o init_tfy.o scaleswn.o karlin.o c_dispn.o p2_workcomp2.o drop_tfz.o workacc.o $(NRAND).o faatran.o $(PLIB) $(LIB_M)

p2_complib2.o : p2_complib2.c msg.h defs.h upam.h uascii.h param.h structs.h
	$(CC) $(CFLAGS) p2_complib2.c -c -o p2_complib2.o 

p2_workcomp2.o : p2_workcomp2.c structs.h msg.h defs.h mw.h upam.h uascii.h param.h
	$(NCC) $(CFLAGS) -c p2_workcomp2.c