makefile.pvm4_sql

序列对齐 Compare a protein sequence to a protein sequence database or a DNA sequence to a DNA sequenc

#
# $Name: fa35_03_06 $ - $Id: Makefile.pvm4_sql,v 1.29 2007/12/13 14:38:19 wrp Exp $
#
# tested with pvm3.4.beta7 and pvm3.3.11.  Tested on DEC Alpha, x86
# and Alpha LINUX for DEC/Compaq Alpha/LINUX
#

#CC=/opt/parasoft/bin.linux2/insure -g -DDEBUG
CC= cc -g
NCC= cc -O -g

#ARCH   =       NETBSDPOWERPC

PLIB    =       ${PVM_ROOT}/lib/$(ARCH)/libpvm3.a
XDIR    =       /seqprg/pvm3/bin/$(ARCH)
#XDIR    =       /wrpx00.p0/users/wrp/pvm3/bin/$(ARCH)
SDIR    =       .
PVMSRC  =	${PVM_ROOT}/src

CFLAGS= -DPVM_SRC -DUNIX -DPCOMPLIB -DBFR=1200 -DBIGMEM -I${PVM_ROOT}/include -DSRAND=srandom -DRAND=random -DHAS_INTTYPES  -DSAMP_STATS -DMYSQL_DB -I/usr/include/mysql -DM10_CONS  -DSHOWSIM
# -DSFCHAR="'|'" -DSUPERFAMNUM

HFLAGS= -o
NFLAGS= -o

NCBL_LIB=ncbl2_mlib.o mysql_lib.o
#  pgsql_lib.o
#NCBL_LIB=ncbl2_mlib.o
LIB_M= -L/usr/lib/mysql -lmysqlclient -lm
#LIB_M=  -lm
LIB_WM= -lm

# standard nxgetaa, no memory mapping for 0 - 6
#LGETLIB=lgetlib.o
#NGETLIB=nmgetlib

# memory mapping for 0FASTA, 5PIRVMS, 6GCGBIN
LGETLIB=lgetlib.o lgetaa_m.o
NGETLIB=nmgetlib

NRAND=nrandom

# set up files for SSE2/Altivec acceleration
#
include Makefile.sse_alt

# no acceleration
#
DROPGSW_O = $(DROPGSW_NA_O)
DROPLAL_O = $(DROPLAL_NA_O)

# common pv34comp programs
include Makefile.pvcom

# common *.o files for all environments
include Makefile.fcom