makefile.mpi4_bluegene

序列对齐 Compare a protein sequence to a protein sequence database or a DNA sequence to a DNA sequenc

#
# $Name: fa35_03_06 $ - $Id: Makefile.mpi4_bluegene,v 1.4 2007/12/13 14:38:19 wrp Exp $
#
# 21 July, 2000
#
# Makefile for MPI versions of the parallel library comparison programs.
# this file is derived from Makefile.pvm, with only a few differences:
# (1) -DMPI_SRC instead of -DPVM_SRC
# (2) programs are mp34comp*, ms34comp*, and mu34comp* rather than pv34comp*, etc.
# (3) MPI does not require/allow a "worker" program, thus no c3.work*
#
# 1-April-2006 - Makefile for IBM BlueGene - use -DMAXWRKR to set the
# maximum number of workers.
#
CC= blrts_xlc -O3 -qsource -qlist -qarch=440d -qtune=440
NCC= blrts_xlc -O3  -qsource -qlist -qarch=440d -qtune=440
LCC= blrts_xlc -O3

MPI_ROOT = /bgl/BlueLight/ppcfloor/bglsys
PLIB    =      -L${MPI_ROOT}/lib -lmpich.rts -lrts.rts -ldevices.rts -lmsglayer.rts -ldevices.440
XDIR    =       /home/slib/mpi/bin/
SDIR    =       .

CFLAGS= -DMPI_SRC -DMAXWRKR=128 -DUNIX -DPCOMPLIB -DBFR=1200 -I${MPI_ROOT}/include -DSRAND=srand -DRAND=random -DHAS_INTTYPES -DSAMP_STATS
# -DMYSQL_DB -I/usr/include/mysql
# -DSFCHAR="'|'" -DSUPERFAMNUM 

# standard nxgetaa, no memory mapping for 0 - 6
#LGETLIB=getseq.o lgetlib.o
#NGETLIB=nmgetlib

# memory mapping for 0FASTA, 5PIRVMS, 6GCGBIN
LGETLIB=getseq.o lgetlib.o lgetaa_m.o
NGETLIB=nmgetlib

NRAND=nrandom

SHOWBESTC = mshowbest.c
SHOWALIGN = mshowalign
MWH = p_mw.h
MWHP = p_mw.h w_mw.h

#NCBL_LIB=ncbl2_mlib.o mysql_lib.o
NCBL_LIB=ncbl2_mlib.o
#LIB_M= -L/usr/lib/mysql -lmysqlclient -lz -lm
LIB_M= -lm

LFLAGS= -o

# set up files for SSE2/Altivec acceleration
#
include Makefile.sse_alt

# no acceleration
#
DROPGSW_O = $(DROPGSW_NA_O)

include Makefile.mpcom

include Makefile.fcom