rest_setroi.m

While resting-state fMRI is drawing more and more attention, there has not been a software for its d

	
	%Time Course
	uicontrol(AConfig.hFig, 'Style','Frame', 'Units','pixels', ...
			'BackgroundColor', get(AConfig.hFig,'Color'), ...
			'Position', [theLeft,theBottom,380,70]);
	hSlectTxt =uicontrol('Style', 'radiobutton',	'Units', 'pixels', ...
				'BackgroundColor', get(AConfig.hFig,'Color'), 'Value', 0,...
				'Position', [theLeft+10,theBottom+60,120,20],...
				'String', 'Time courses');
	uicontrol('Style', 'text',	'Units', 'pixels', ...
			'BackgroundColor', get(AConfig.hFig,'Color'), ...
			'HorizontalAlignment', 'left', ...
			'Visible', 'on', ...
			'Position', [theLeft+10,theBottom+30,360,25], ...
			'String', sprintf(['User defined time courses contained in a txt file']));
	hROITxtLocation =uicontrol('Style', 'edit', 'Units', 'pixels', ...%'BackgroundColor', get(AConfig.hFig,'Color'), ...
					'HorizontalAlignment', 'left', ...
					'Visible', 'on', ...					
					'ForegroundColor', 'red', 'FontWeight', 'bold', ...
					'Position', [theLeft+10,theBottom+10,360,20], ...
					'String', 'dd');
	set(hROITxtLocation, 'Callback',sprintf('rest_SetROI( ''ManualyChangeROIDefinitionInEdit'')'));
	
	%ROI
	OffsetX =MarginX;
	OffsetY =MarginY+80;	
	
	theLeft =OffsetX; theBottom =OffsetY +40;
	uicontrol(AConfig.hFig, 'Style','Frame', 'Units','pixels', ...
			'BackgroundColor', get(AConfig.hFig,'Color'), ...
			'Position', [theLeft,theBottom,380,160]);
	hSlectNonSphere =uicontrol('Style', 'radiobutton',	'Units', 'pixels', ...
				'BackgroundColor', get(AConfig.hFig,'Color'), ...
				'Position', [theLeft+10,theBottom+150,120,20],'String', 'ROI');
	hNonSphereDescription =uicontrol('Style', 'text',	'Units', 'pixels', ...
				'BackgroundColor', get(AConfig.hFig,'Color'), ...
				'HorizontalAlignment', 'left', ...
				'Visible', 'on', ...
				'Position', [theLeft+10,theBottom+40,360,105], ...
				'String', sprintf(['There are 4 methods to generate the ROI mask file:' ...
				 '\n\n1. From statistical t-map by selecting cluster after thresholding' ...
				  '\n2. From AAL template by selecting specific area'...
				  '\n3. From Brodmann template by selecting specific area'...
				  '\n4. From user defined mask file']));
	hFromTMap=uicontrol('Style', 'radiobutton',	'Units', 'pixels', ...
				'BackgroundColor', get(AConfig.hFig,'Color'), ...
				'Visible', 'off', ...
				'Position', [theLeft+30,theBottom+105,340,16],'String', '1. From statistical t-map by selecting cluster after thresholding');
	hFromAAL=uicontrol('Style', 'radiobutton',	'Units', 'pixels', ...
				'BackgroundColor', get(AConfig.hFig,'Color'), ...
				'Visible', 'off', ...
				'Position', [theLeft+30,theBottom+85,340,16],'String', '2. From AAL template by selecting specific area');
	hFromBrodmann=uicontrol('Style', 'radiobutton',	'Units', 'pixels', ...
				'BackgroundColor', get(AConfig.hFig,'Color'), ...
				'Visible', 'off', ...
				'Position', [theLeft+30,theBottom+65,340,16],'String', '3. From Brodmann template by selecting specific area');
	hFromUserDefinedMask=uicontrol('Style', 'radiobutton',	'Units', 'pixels', ...
				'BackgroundColor', get(AConfig.hFig,'Color'), ...
				'Visible', 'off', ...
				'Position', [theLeft+30,theBottom+45,340,16],'String', '4. From user defined mask file');
	hROINonSphereInfo =uicontrol('Style', 'edit', 'Units', 'pixels', ...%'BackgroundColor', get(AConfig.hFig,'Color'), ...
					'HorizontalAlignment', 'left', ...
					'Visible', 'on', ...
					'ForegroundColor', 'red', 'FontWeight', 'bold', ...
					'Position', [theLeft+10,theBottom+10,360,20], ...
					'String', 'dd');
	set(hROINonSphereInfo, 'Callback',sprintf('rest_SetROI( ''ManualyChangeROIDefinitionInEdit'')'));
	
	
	%Seed ROI
	theLeft =OffsetX; theBottom =OffsetY +220;
	uicontrol(AConfig.hFig, 'Style','Frame', 'Units','pixels', ...
			'BackgroundColor', get(AConfig.hFig,'Color'), ...
			'Position', [theLeft,theBottom,380,70]);
	hSlectSphere =uicontrol('Style', 'radiobutton',	'Units', 'pixels', ...
				'BackgroundColor', get(AConfig.hFig,'Color'), 'Value', 1,...
				'Position', [theLeft+10,theBottom+60,120,20],'String', 'Seed ROI');
	uicontrol('Style', 'text',	'Units', 'pixels', ...
			'BackgroundColor', get(AConfig.hFig,'Color'), ...
			'HorizontalAlignment', 'left', ...
			'Visible', 'on', ...
			'Position', [theLeft+10,theBottom+30,360,25], ...
			'String', sprintf(['Define a seed ROI by setting the center coordinate and the radius(mm)']));
	hROISphereInfo =uicontrol('Style', 'edit', 'Units', 'pixels', ...%'BackgroundColor', get(AConfig.hFig,'Color'), ...
					'HorizontalAlignment', 'left', ...
					'Visible', 'on', ...
					'ForegroundColor', 'red', 'FontWeight', 'bold', ...
					'Position', [theLeft+10,theBottom+10,360,20], ...
					'String', 'dd');
	set(hROISphereInfo, 'Callback',sprintf('rest_SetROI( ''ManualyChangeROIDefinitionInEdit'')'));
	
	
	uicontrol('Style', 'pushbutton',	'Units', 'pixels', ...
				'Visible', 'on', 'Callback', sprintf('rest_SetROI(''Delete'');') ,...
				'Position', [MarginX,MarginY,75,25], ...
				'String', 'Done');
	%rest_misc( 'ViewROI', AROIDef); 
	uicontrol('Style', 'pushbutton',	'Units', 'pixels', ...
				'Visible', 'on', 'Callback', sprintf('rest_SetROI(''ViewROI'');') ,...
				'Position', [MarginX+80,MarginY,75,25], ...
				'String', 'View ROI');
	
	hNext =uicontrol('Style', 'pushbutton',	'Units', 'pixels', ...
				'Visible', 'on', ...
				'Callback', 'rest_SetROI( ''Next'' );', ...
				'Position', [MarginX+305,MarginY,75,25], ...
				'String', 'Next');
	
	theRadioButtons =findobj(AConfig.hFig, 'Style', 'radiobutton');
	for x=1:length(theRadioButtons), 
		set(theRadioButtons(x), 'Callback', 'rest_SetROI( ''Select'' );');
	end
	%Save handles			
	AConfig.hSlectNonSphere =hSlectNonSphere;
	AConfig.hNonSphereDescription =hNonSphereDescription;	
	AConfig.hFromTMap		=hFromTMap	;	
	AConfig.hFromAAL	=hFromAAL;
	AConfig.hFromBrodmann	=hFromBrodmann;
	AConfig.hFromUserDefinedMask=hFromUserDefinedMask;	
	AConfig.hROINonSphereInfo=hROINonSphereInfo;
	
	AConfig.hSlectSphere=hSlectSphere;
	AConfig.hROISphereInfo=hROISphereInfo;
	
	AConfig.hSlectTxt =hSlectTxt;
	AConfig.hROITxtLocation =hROITxtLocation;
	
	AConfig.hNext =hNext;
		
	Result =AConfig;
	
function UpdateDisplay(AConfig)
	if get(AConfig.hSlectSphere, 'Value'),
		set(AConfig.hROISphereInfo, 'String', AConfig.ROIDefinition);
		
		set(AConfig.hSlectNonSphere, 'Value', 0);
		set(AConfig.hNonSphereDescription, 'String', sprintf(['There are 4 methods to generate the ROI mask file:' ...
				 '\n\n1. From statistical t-map by selecting cluster after thresholding' ...
				  '\n2. From AAL template by selecting specific area'...
				  '\n3. From Brodmann template by selecting specific area'...
				  '\n4. From user defined mask file'])); 
		set(AConfig.hFromTMap, 'Visible', 'off');
		set(AConfig.hFromAAL, 'Visible', 'off');
		set(AConfig.hFromBrodmann, 'Visible', 'off');
		set(AConfig.hFromUserDefinedMask, 'Visible', 'off');
		set(AConfig.hROINonSphereInfo, 'String', '');
				
		set(AConfig.hSlectTxt, 'Value', 0);
		set(AConfig.hROITxtLocation, 'String', '');
		
	elseif get(AConfig.hSlectNonSphere, 'Value'),
		set(AConfig.hSlectSphere, 'Value', 0);
		set(AConfig.hROISphereInfo, 'String', '');
		
		set(AConfig.hNonSphereDescription, 'String',sprintf(['There are 4 methods to generate the ROI mask file:'])); 
		set(AConfig.hFromTMap, 'Visible', 'on');
		set(AConfig.hFromAAL, 'Visible', 'on');
		set(AConfig.hFromBrodmann, 'Visible', 'on');
		set(AConfig.hFromUserDefinedMask, 'Visible', 'on');
		set(AConfig.hROINonSphereInfo, 'String', AConfig.ROIDefinition);
		
		set(AConfig.hSlectTxt, 'Value', 0);
		set(AConfig.hROITxtLocation, 'String', '');
	elseif get(AConfig.hSlectTxt, 'Value'),
		set(AConfig.hSlectSphere, 'Value', 0);
		set(AConfig.hROISphereInfo, 'String', '');	
		
		set(AConfig.hSlectNonSphere, 'Value', 0);
		set(AConfig.hNonSphereDescription, 'String', sprintf(['There are 4 methods to generate the ROI mask file:' ...
				 '\n\n1. From statistical t-map by selecting cluster after thresholding' ...
				  '\n2. From AAL template by selecting specific area'...
				  '\n3. From Brodmann template by selecting specific area'...
				  '\n4. From user defined mask file'])); 
		set(AConfig.hFromTMap, 'Visible', 'off');
		set(AConfig.hFromAAL, 'Visible', 'off');
		set(AConfig.hFromBrodmann, 'Visible', 'off');
		set(AConfig.hFromUserDefinedMask, 'Visible', 'off');
		set(AConfig.hROINonSphereInfo, 'String', '');
		
		set(AConfig.hROITxtLocation, 'String', AConfig.ROIDefinition);		
	end
	
	set(AConfig.hNext, 'Enable', 'on', 'ForegroundColor', 'black');