alff_gui.m

While resting-state fMRI is drawing more and more attention, there has not been a software for its d

	uicontrol(handles.figAlffMain, 'Style','Frame','Position',[2 offsetY+515 1 50]);	
	uicontrol(handles.figAlffMain, 'Style','Frame','Position',[2 offsetY+565 433 1]);	
	uicontrol(handles.figAlffMain,'Style','Text','Position',[142 offsetY+555 180 14],...
		'String','Option: Remove Linear Trend');
	
	
	%20070506, Add manual operation button groups like SPM
	uicontrol(handles.figAlffMain, 'Style','Frame','Position',[2 offsetY-25 433 1]);	
	uicontrol(handles.figAlffMain,'Style','Text','Position',[152 offsetY-30 140 14],...
		'String','Manual Operations');
	

function InitControlProperties(hObject, handles)
	%for Linux compatible 20070507 dawnsong
	% --- FIGURE -------------------------------------
	set(handles.figAlffMain,...
		'Units', 'pixels', ...
		'Position', [20 5 440 650], ...
		'Name', 'alff_gui', ...
		'MenuBar', 'none', ...
		'NumberTitle', 'off', ...
		'Color', get(0,'DefaultUicontrolBackgroundColor'));

	% --- STATIC TEXTS -------------------------------------
	set(handles.txtAlff,	...		
		'Style', 'text', ...
		'Units', 'pixels', ...
		'Position', [16 186 91 40], ...
		'FontSize', 24, ...
		'FontWeight', 'bold', ...
		'String', 'ALFF');
	
	theFontSize =8;
	if isunix, theFontSize =10; end
	set(handles.txtAlffLongName,	...		
		'Style', 'text', ...
		'Units', 'pixels', ...
		'Position', [10 300 65 76], ...
		'FontSize', theFontSize, ...
		'FontWeight', 'normal', ...
		'Enable', 'off', ...
		'String', sprintf('Amplitude\nof Low\nFrequency\nFluctuation\nComputation'));
		
	set(handles.txtOutputDir,	...		
		'Style', 'text', ...
		'Units', 'pixels', ...
		'Position', [8 109 80 21], ...
		'FontSize', theFontSize, ...
		'String', 'Directory:');

	set(handles.txtInputDir,	...		
		'Style', 'text', ...
		'Units', 'pixels', ...
		'Position', [7 386 80 21], ...
		'String', 'Data Directory:');

	set(handles.txtPrefix,	...		
		'Style', 'text', ...
		'Units', 'pixels', ...
		'Position', [9 140 80 21], ...
		'String', 'Prefix:');

	set(handles.txtResultFilename,	...		
		'Style', 'text', ...
		'Units', 'pixels', ...
		'Position', [227 148 200 16], ...
		'HorizontalAlignment','left'         , ...
		'String', 'Result: Prefix_DirectoryName.{hdr/img}');

	set(handles.txtBandSep,	...		
		'Style', 'text', ...
		'Units', 'pixels', ...
		'Position', [146 526 25 51], ...
		'FontSize', 28, ...
		'String', '~');

	set(handles.txtTR,	...		
		'Style', 'text', ...
		'Units', 'pixels', ...
		'Position', [230 540 40 16], ...
		'String', 'TR: (s)');

	set(handles.txtAlffBand,	...		
		'Style', 'text', ...
		'Units', 'pixels', ...
		'Position', [20 245 50 16], ...		
		'String', 'Band( Hz)');
		
	set(handles.txtAlffBandSep,	...		
		'Style', 'text', ...
		'Units', 'pixels', ...
		'Position', [144 230 25 51], ...
		'FontSize', 28, ...
		'String', '~');

	set(handles.txtAlffTR,	...		
		'Style', 'text', ...
		'Units', 'pixels', ...
		'Position', [230 245 40 16], ...
		'String', 'TR: (s)');

		
	% --- PUSHBUTTONS -------------------------------------
	set(handles.btnSelectOutputDir,	...		
		'Style', 'pushbutton', ...
		'Units', 'pixels', ...
		'Position', [396 107 30 25], ...
		'FontSize', 18, ...
		'String', '...');

	set(handles.btnSelectDataDir,	...		
		'Style', 'pushbutton', ...
		'Units', 'pixels', ...
		'Position', [396 384 30 25], ...
		'FontSize', 18, ...
		'String', '...', ...
		'CData', zeros(1,0));

	set(handles.btnSelectMask,	...		
		'Style', 'pushbutton', ...
		'Units', 'pixels', ...
		'Position', [396 290 30 25], ...
		'FontSize', 18, ...
		'String', '...', ...
		'Enable', 'off', ...
		'CData', zeros(1,0));

	set(handles.btnComputeAlff,	...		
		'Style', 'pushbutton', ...
		'Units', 'pixels', ...
		'Position', [320 186 107 33], ...
		'FontSize', 12, ...
		'FontWeight', 'bold', ...
		'String', 'Do all');

		
	set(handles.btnDetrend , ...
		'Style', 'pushbutton', ...
		'Units', 'pixels', ...
		'Position', [337 603 90 25], ...
		'FontSize', 10, ...
		'Enable', 'off', ...  %Update filter and detrend button's state according to Option: detrend/Filter 20070820
		'String', 'Detrend');
	set(handles.btnBandPass , ...
		'Style', 'pushbutton', ...
		'Units', 'pixels', ...
		'Position', [337 540 90 25], ...
		'FontSize', 10, ...
		'Enable', 'off', ...  %Update filter and detrend button's state according to Option: detrend/Filter 20070820
		'String', 'Filter');
	set(handles.btnAlffBandDetail , ...
		'Style', 'pushbutton', ...
		'Units', 'pixels', ...
		'Position', [337 244 90 25], ...
		'FontSize', 10, ...
		'String', 'Band Hint');
		
		
	set(handles.btnHelp,	...
		'Style', 'pushbutton', ...
		'Units', 'pixels', ...
		'Position', [10 10 90 33], ...
		'FontSize', 10, ...
		'String', 'Help');	
	set(handles.btnDivideMean,	...
		'Style', 'pushbutton', ...
		'Units', 'pixels', ...
		'Position', [110 10 90 33], ...
		'FontSize', 10, ...
		'String', 'Divide Mean');
	set(handles.btnSliceViewer,	...
		'Style', 'pushbutton', ...
		'Units', 'pixels', ...
		'Position', [210 10 90 33], ...
		'FontSize', 10, ...
		'String', 'Slice Viewer');	
	set(handles.btnWaveGraph,	...
		'Style', 'pushbutton', ...
		'Units', 'pixels', ...
		'Position', [314 10 110 33], ...
		'FontSize', 10, ...
		'String', 'Power Spectrum');
		
		
	% --- RADIO BUTTONS -------------------------------------
	set(handles.rbtnDefaultMask,	...		
		'Style', 'radiobutton', ...
		'Units', 'pixels', ...
		'Position', [110 347 158 16], ...
		'String', 'Default mask');

	set(handles.rbtnUserMask,	...		
		'Style', 'radiobutton', ...
		'Units', 'pixels', ...
		'Position', [110 321 148 16], ...
		'String', 'User''s defined mask');

	set(handles.rbtnNullMask,	...		
		'Style', 'radiobutton', ...
		'Units', 'pixels', ...
		'Position', [277 348 82 16], ...
		'String', 'No mask');

	% --- CHECKBOXES -------------------------------------
	set(handles.ckboxFilter,	...		
		'Style', 'checkbox', ...
		'Units', 'pixels', ...
		'Position', [14 540 80 22], ...
		'String', 'Band (Hz)');

	set(handles.ckboxDivideMean,	...		
		'Style', 'checkbox', ...
		'Units', 'pixels', ...
		'Position', [12 82 430 19], ...
		'String', 'Divide ALFF brain by the mean within the mask (mPrefix_DirectoryName.{hdr/img})');

	set(handles.ckboxRetrend,	...		
		'Style', 'checkbox', ...
		'Units', 'pixels', ...
		'Position', [366 540 60 22], ...
		'Enable', 'Off', ...
		'String', 'Retrend');

	set(handles.ckboxRemoveTrendBefore, ...
		'Style', 'checkbox', ...
		'Units', 'pixels', ...
		'Position', [13 605 140 21],...
		'String', 'detrend'); %'String', 'detrend BEFORE Filter');
	set(handles.ckboxRemoveTrendAfter, ...
		'Style', 'checkbox', ...
		'Units', 'pixels', ...
		'Position', [171 605 140 21],...
		'Visible', 'off', ...
		'String', 'detrend AFTER Filter');	
		
	% --- EDIT TEXTS -------------------------------------
	set(handles.edtOutputDir,	...		
		'Style', 'edit', ...
		'Units', 'pixels', ...
		'Position', [94 109 300 23], ...
		'BackgroundColor', [1 1 1], ...
		'String', 'Edit Text');

	set(handles.edtDataDirectory,	...		
		'Style', 'edit', ...
		'Units', 'pixels', ...
		'Position', [94 386 300 22], ...
		'BackgroundColor', [1 1 1], ...
		'String', '');

	set(handles.edtMaskfile,	...		
		'Style', 'edit', ...
		'Units', 'pixels', ...
		'Position', [94 290 300 23], ...
		'BackgroundColor', [1 1 1], ...
		'String', 'Edit Text', ...
		'Enable', 'off');

	set(handles.edtPrefix,	...		
		'Style', 'edit', ...
		'Units', 'pixels', ...
		'Position', [94 142 115 22], ...
		'BackgroundColor', [1 1 1], ...
		'String', 'ALFFMap');

	set(handles.edtBandLow,	...		
		'Style', 'edit', ...
		'Units', 'pixels', ...
		'Position', [94 541 50 22], ...
		'BackgroundColor', [1 1 1], ...
		'String', '0.01', ...
		'Enable', 'off');

	set(handles.edtBandHigh,	...		
		'Style', 'edit', ...
		'Units', 'pixels', ...
		'Position', [171 541 50 22], ...
		'BackgroundColor', [1 1 1], ...
		'String', '0.08', ...
		'Enable', 'off');

	set(handles.edtSamplePeriod,	...		
		'Style', 'edit', ...
		'Units', 'pixels', ...
		'Position', [276 541 50 22], ...
		'BackgroundColor', [1 1 1], ...
		'String', '2', ...
		'Enable', 'off');

	set(handles.edtAlffBandLow,	...		
		'Style', 'edit', ...
		'Units', 'pixels', ...
		'Position', [94 245 50 22], ...
		'BackgroundColor', [1 1 1], ...
		'String', '0.01', ...
		'Enable', 'on');

	set(handles.edtAlffBandHigh,	...		
		'Style', 'edit', ...
		'Units', 'pixels', ...
		'Position', [171 245 50 22], ...
		'BackgroundColor', [1 1 1], ...
		'String', '0.08', ...
		'Enable', 'on');

	set(handles.edtAlffSamplePeriod,	...		
		'Style', 'edit', ...
		'Units', 'pixels', ...
		'Position', [276 245 50 22], ...
		'BackgroundColor', [1 1 1], ...
		'String', '2', ...
		'Enable', 'on');

		
	% --- LISTBOXES -------------------------------------
	set(handles.listDataDirs,	...		
		'Style', 'listbox', ...
		'Units', 'pixels', ...
		'Position', [14 413 413 98], ...
		'BackgroundColor', [1 1 1], ...
		'String', '');

	%20071103, Add context menu to Input Data Directories to add、delete、export、import……
	handles.hContextMenu =uicontextmenu;
	set(handles.listDataDirs, 'UIContextMenu', handles.hContextMenu);	
	uimenu(handles.hContextMenu, 'Label', 'Add a directory', 'Callback', get(handles.btnSelectDataDir, 'Callback'));	
	uimenu(handles.hContextMenu, 'Label', 'Remove selected directory', 'Callback', 'alff_gui(''DeleteSelectedDataDir'',gcbo,[], guidata(gcbo))');
	uimenu(handles.hContextMenu, 'Label', 'Add recursively all sub-folders of a directory', 'Callback', 'alff_gui(''RecursiveAddDataDir'',gcbo,[], guidata(gcbo))');
	uimenu(handles.hContextMenu, 'Label', '=============================');	
	uimenu(handles.hContextMenu, 'Label', 'Clear all data directories', 'Callback', 'alff_gui(''ClearDataDirectories'',gcbo,[], guidata(gcbo))');
	
	
	% Save handles structure
	guidata(hObject,handles);