galistgenome.c

关于遗传算法代码。比较全。希望能给大家带来帮助。

// $Header: /usr/people/mbwall/src/galib/ga/RCS/GAListGenome.C,v 1.6 1999/03/28 20:50:34 mbwall Exp $
/* ----------------------------------------------------------------------------
  list.C
  mbwall 25feb95
  Copyright (c) 1995 Massachusetts Institute of Technology
                     all rights reserved

 DESCRIPTION:
  Source file for the list genome.
---------------------------------------------------------------------------- */
#ifndef _ga_list_C_
#define _ga_list_C_

#include <stdio.h>
#include <stdlib.h>
#include <ga/GAListGenome.h>
#include <ga/GAMask.h>

template <class T> int 
GAListIsHole(const GAListGenome<T>&, const GAListGenome<T>&, int, int, int);






template <class T> const char *
GAListGenome<T>::className() const {return "GAListGenome";}
template <class T> int
GAListGenome<T>::classID() const {return GAID::ListGenome;}

template <class T> 
GAListGenome<T>::GAListGenome(GAGenome::Evaluator f, void * u) : 
GAList<T>(),
GAGenome(DEFAULT_LIST_INITIALIZER,
	 DEFAULT_LIST_MUTATOR,
	 DEFAULT_LIST_COMPARATOR) {
  evaluator(f);
  userData(u);
  crossover(DEFAULT_LIST_CROSSOVER);
}


template <class T> 
GAListGenome<T>::GAListGenome(const GAListGenome<T> & orig) : 
GAList<T>(),
GAGenome() {
  GAListGenome<T>::copy(orig);
}


template <class T>
GAListGenome<T>::~GAListGenome() { }


template <class T> GAGenome *
GAListGenome<T>::clone(GAGenome::CloneMethod flag) const {
  GAListGenome<T> *cpy = new GAListGenome<T>();
  if(flag == (int)CONTENTS){cpy->copy(*this);} // the cast is for metrowerks...
  else{cpy->GAGenome::copy(*this);}
  return cpy;
}


template <class T> void
GAListGenome<T>::copy(const GAGenome & orig){
  if(&orig == this) return;
  const GAListGenome<T>* c = DYN_CAST(const GAListGenome<T>*, &orig);
  if(c) {
    GAGenome::copy(*c);
    GAList<T>::copy(*c);
  }
}


#ifndef NO_STREAMS
// Traverse the list (breadth-first) and dump the contents as best we can to
// the stream.  We don't try to write the contents of the nodes - we simply 
// write a . for each node in the list.
template <class T> int
GAListGenome<T>::write(ostream & os) const 
{
  os << "node       next       prev       contents\n";
  if(!hd) return 0;;
  os.width(10); os << hd << " ";
  os.width(10); os << hd->next << " ";
  os.width(10); os << hd->prev << " ";
  os.width(10); os << &(DYN_CAST(GANode<T>*, hd)->contents) << "\n";

  for(GANodeBASE * tmp=hd->next; tmp && tmp != hd; tmp=tmp->next){
    os.width(10); os << tmp << " ";
    os.width(10); os << tmp->next << " ";
    os.width(10); os << tmp->prev << " ";
    os.width(10); os << &(DYN_CAST(GANode<T>*, tmp)->contents) << "\n";
  }
  return 0;
}
#endif


// Both the == and != operators assume that both operator== and operator!= are
// defined for the object that is store in the node of your list.  If it is
// not, you'll get an error message.  If you're storing pointers in the nodes,
// then you have nothing to worry about.
//   Neither of these operators affects the internal iterator of either
// list genome in any way.
template <class T> int 
GAListGenome<T>::equal(const GAGenome & c) const
{
  if(this == &c) return 1;
  const GAListGenome<T> & b = DYN_CAST(const GAListGenome<T>&, c);
  if(size() != b.size()) return 0;

  GAListIter<T> iterA(*this), iterB(b);
  T *tmpA = iterA.head(), *tmpB = iterB.head();
  T *head = tmpA;
  do{
    if(tmpA && tmpB && *tmpA != *tmpB) return gaFalse;
    tmpB = iterB.next();
    tmpA = iterA.next();
  }while(tmpA && tmpA != head);
  return 1;
}









/* ----------------------------------------------------------------------------
   Operator definitions
---------------------------------------------------------------------------- */
// Mutate a list by nuking nodes.  Any node has a pmut chance of getting nuked.
// This is actually kind of bogus for the second part of the if clause (if nMut
// is greater than or equal to 1).  Nodes end up having more than pmut 
// probability of getting nuked.
//   After the mutation the iterator is left at the head of the list.
template <class T> int
GAListGenome<T>::DestructiveMutator(GAGenome & c, float pmut)
{
  GAListGenome<T> &child=DYN_CAST(GAListGenome<T> &, c);
  register int n, i;
  if(pmut <= 0.0) return 0;

  n = child.size();
  float nMut = pmut * STA_CAST(float, n);
  if(nMut < 1.0){		// we have to do a flip test for each node
    nMut = 0;
    for(i=0; i<n; i++){
      if(GAFlipCoin(pmut) && child.warp(i)){
	child.destroy();
	nMut++;
      }
    }
  }
  else{				// only nuke the number of nodes we need to
    for(i=0; i<nMut; i++){
      if(child.warp(GARandomInt(0, n-1)))
	child.destroy();
    }
  }
  child.head();		// set iterator to root node

  return(STA_CAST(int,nMut));
}


// Mutate a list by swapping two nodes.  Any node has a pmut chance of getting
// swapped, and the swap could happen to any other node.  And in the case of
// nMut < 1, the swap may generate a swap partner that is the same node, in 
// which case no swap occurs (we don't check).
//   After the mutation the iterator is left at the head of the list.
template <class T> int
GAListGenome<T>::SwapMutator(GAGenome & c, float pmut)
{
  GAListGenome<T> &child=DYN_CAST(GAListGenome<T> &, c);
  register int n, i;
  if(pmut <= 0.0) return 0;

  n = child.size();
  float nMut = pmut * STA_CAST(float,n);
  nMut *= 0.5;			// swapping one node swaps another as well
  if(nMut < 1.0){		// we have to do a flip test for each node
    nMut = 0;
    for(i=0; i<n; i++){
      if(GAFlipCoin(pmut)){
	child.swap(i,GARandomInt(0,n-1));
	nMut++;
      }
    }
  }
  else{				// only nuke the number of nodes we need to
    for(i=0; i<nMut; i++)
      child.swap(GARandomInt(0,n-1),GARandomInt(0,n-1));
  }
  child.head();		// set iterator to root node

  return(STA_CAST(int, nMut*2));
}


// This comparator returns the number of elements that the two lists have
// in common (both in position and in value).  If they are different lengths
// then we just say they are completely different.  This is probably barely 
// adequate for most applications - we really should give more credit for
// nodes that are the same but in different positions.  But that would be
// pretty nasty to compute.
//   This is somewhat problematic since there is no absolute measure against
// which to compare this diversity measure.  Its kind of hard to define this
// one in a general way...
template <class T> float
GAListGenome<T>::NodeComparator(const GAGenome& a, const GAGenome& b) 
{
  if(&a == &b) return 0;
  const GAListGenome<T>& sis=DYN_CAST(const GAListGenome<T>&, a);
  const GAListGenome<T>& bro=DYN_CAST(const GAListGenome<T>&, b);

  if(sis.size() > bro.size()) return (float)(sis.size() - bro.size());
  if(sis.size() < bro.size()) return (float)(bro.size() - sis.size());
  if(sis.size() == 0) return 0;

  float count = 0;
  GAListIter<T> biter(bro), siter(sis);
  T *sptr, *bptr;
  for(int i=siter.size()-1; i>=0; i--) {
    sptr = siter.next();
    bptr = biter.next();
    if(sptr != 0 && bptr != 0)
      count += ((*sptr == *bptr) ? 0 : 1);
  }
  return count;
}








#define SWAP(a,b) {unsigned int tmp=a; a=b; b=tmp;}

// This crossover picks a site between nodes in each parent.  It is the same 
// as single point crossover on a resizeable binary string genome.  The site
// in the mother is not necessarily the same as the site in the father!
//   When we pick a crossover site, it is between nodes of the list (otherwise
// we won't be able to do NULL lists or get an empty list from one parent or
// the other).  Beware that a list is numbered from 0 to size-1, inclusive,
// whereas the cross site possibilities are numbered from 0 to size, inclusive.
// This means we have to map the site to the list to determine whether an
// insertion should occur before or after a node.
//   We first copy the mother into the child (this deletes whatever contents 
// were in the child originally).  Then we clone the father from the cross site
// to the end of the list.  Then we delete the tail of the child from the
// mother's cross site to the end of the list.  Finally, we insert the clone
// at the end of the child.
//   The last thing we do is delete the clone (the contents of the clone are
// now owned by the child, but the clone itself uses memory that we must free).
//   This implementation isn't particularly efficient.  For example, we copy
// the mother then proceed to destroy much of the copy we just made.  We could
// do better by copying only what we need of the mother.
template <class T> int
GAListGenome<T>::
OnePointCrossover(const GAGenome& p1, const GAGenome& p2, 
		  GAGenome* c1, GAGenome* c2){
  const GAListGenome<T> &mom=DYN_CAST(const GAListGenome<T> &, p1);
  const GAListGenome<T> &dad=DYN_CAST(const GAListGenome<T> &, p2);

  int nc=0;
  int a = GARandomInt(0, mom.size());
  int b = GARandomInt(0, dad.size());
  GAList<T> * list;

  if(c1){
    GAListGenome<T> &sis=DYN_CAST(GAListGenome<T> &, *c1);
    sis.GAList<T>::copy(mom);
    list = dad.GAList<T>::clone(b);
    if(a < mom.size()){
      T *site = sis.warp(a);
      while(sis.tail() != site)
	sis.destroy();		// delete the tail node
      sis.destroy();		// trash the trailing node (list[a])
    }
    else{
      sis.tail();		// move to the end of the list
    }
    sis.insert(list);		// stick the clone onto the end
    delete list;
    sis.head();			// set iterator to head of list
    nc += 1;
  }

  if(c2){
    GAListGenome<T> &bro=DYN_CAST(GAListGenome<T> &, *c2);
    bro.GAList<T>::copy(dad);
    list = mom.GAList<T>::clone(a);
    if(b < dad.size()){
      T *site = bro.warp(b);
      while(bro.tail() != site)
	bro.destroy();		// delete the tail node
      bro.destroy();		// trash the trailing node (list[a])
    }
    else{