📄 1mvm.pdb
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REMARK 350 BIOMT2 36 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 36 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 37 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 37 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 37 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 38 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 38 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 38 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 39 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 39 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 40 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 40 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 40 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 41 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 41 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 41 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 42 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 42 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 42 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 43 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 43 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 43 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 44 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 44 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 44 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 45 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 45 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 45 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 46 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 46 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 46 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 47 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 47 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 47 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 48 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 48 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 48 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 49 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 49 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 49 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 50 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 50 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 51 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 51 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 51 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 52 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 52 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 52 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 53 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 53 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 54 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 54 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 54 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 55 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 55 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 55 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 56 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 56 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 56 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 57 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 57 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 57 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 58 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 58 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 58 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 59 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 59 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 59 -0.809017 -0.309017 0.500000 0.00000 REMARK 400 REMARK 400 COMPND REMARK 400 IN MINUTE VIRUS OF MICE UP TO 20 PERCENT OF THE 60 REMARK 400 COPIES OF VP2 IN EACH CAPSID ARE REPLACED BY VP1, REMARK 400 THE PRODUCT OF ALTERNATE TRANSCRIPTIONAL SPLICING, REMARK 400 CONTAINING AN ADDITIONAL 130 N-TERMINAL AMINO ACIDS. REMARK 400 NO EVIDENCE IS SEEN FOR THIS EXTENSION IN THE 60-FOLD REMARK 400 AVERAGED ELECTRON DENSITY MAP. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 525 PHE A 526 0 149.29 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 4*RMSD AND BY MORE THAN 0.150 ANGSTROMS (M=MODEL REMARK 500 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 500 NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,1X,2(A4,A1,3X),12X,F5.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 0 GLY A 555 CA GLY A 555 C 0.397 REMARK 500 0 ALA A 174 CA CYS A 175 N 0.523 REMARK 500 0 CYS A 155 CA MET A 176 N 0.155 REMARK 500 0 ARG A 330 CA THR A 331 N 0.227 REMARK 500 0 ASP A 344 CA PHE A 345 N 0.579 REMARK 500 0 PRO A 352 CA PHE A 353 N 0.712 REMARK 500 0 SER A 373 CA VAL A 374 N 0.548 REMARK 500 0 VAL A 374 CA ARG A 375 N 0.290 REMARK 500 0 ILE A 483 CA THR A 484 N 0.517 REMARK 500 0 PHE A 525 CA PHE A 526 N 0.451 REMARK 500 0 PHE A 526 CA TRP A 527 N 0.456 REMARK 500 0 ALA A 539 CA ASN A 540 N 0.211 REMARK 500 0 ASP A 553 CA ASN A 554 N 0.279 REMARK 700 REMARK 700 SHEET REMARK 700 THE STRUCTURE OF MINUTE VIRUS OF MICE FOLLOWS THE REMARK 700 CANONICAL PICORNAVIRUS "JELLY ROLL" BARREL. THE SHEET REMARK 700 IDENTIFIED AS "BDG" IS THAT REFERRED TO AS "BIDG" IN THE REMARK 700 LITERATURE WITH STRANDS 1 TO 5 CORRESPONDING TO STRANDS REMARK 700 A, B, I, D, AND G. THE SHEET IDENTIFIED AS "CHF" IS THE REMARK 700 SO-CALLED CHEF SHEET WITH STRANDS 1 TO 4 CORRESPONDING TO REMARK 700 STRANDS C, H, E, AND F. THESE TWO SHEETS ARE LOOSELY REMARK 700 CONNECTED TOGETHER BY HYDROGEN BONDS BETWEEN STRAND 4 OF REMARK 700 "CHF" AND RESIDUE 47 IMMEDIATELY PRECEDING STRAND 1 OF REMARK 700 "BDG" OF A FIVE-FOLD RELATED PROTOMER THAT IS NOT REMARK 700 EXPLICITLY PRESENTED ON THE ATOM RECORDS, BUT WHICH CAN BE REMARK 700 GENERATED USING THE SYMMETRY OPERATORS LISTED BELOW. MVM REMARK 700 CONTAINS SEVERAL LONG LOOPS BETWEEN STRANDS OF "BDG" AND REMARK 700 "CHF" WITH LITTLE ORGANIZED SECONDARY STRUCTURE. THERE ARE REMARK 700 STRANDS WITHIN THE LOOPS THAT ARE LOOSELY HYDROGEN-BONDED REMARK 700 TOGETHER. WITH FEWER HYDROGEN BONDS AND LESS REGULAR REMARK 700 SECONDARY STRUCTURE THEY MUST BE REGARDED MORE TENTATIVELY REMARK 700 UNTIL THE STRUCTURE IS REFINED. THIS IS WHY THE SHEET REMARK 700 "LP2" HAS BEEN IDENTIFIED SEPARATELY, ALTHOUGH IT COULD BE REMARK 700 CONSIDERED TO BE AN EXTENSION OF SHEET "CHF", EXTENDING REMARK 700 FROM STRAND 1. STRAND 1 OF "LP2" HAS A BULGE AND A CHANGE REMARK 700 OF DIRECTION AT RESIDUE 109, AFTER WHICH IT BECOMES STRAND REMARK 700 1 OF "CHF". REMARK 700 REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. STRANDS 1, 2, 3, AND 4 OF SHEET REMARK 700 BDG AND CDG ARE IDENTICAL. REMARK 999 REMARK 999 SEQUENCE REMARK 999 1MVM A SWS P07302 1 - 169 NOT IN ATOMS LIST DBREF 1MVM A 39 587 SWS P07302 COAT_MUMIM 170 718 DBREF 1MVM B 1 11 PDB 1MVM 1MVM 1 11 DBREF 1MVM C 14 17 PDB 1MVM 1MVM 14 17 DBREF 1MVM D 20 20 PDB 1MVM 1MVM 20 20 SEQADV 1MVM MET A 366 SWS P07302 VAL 497 VARIANT SEQADV 1MVM THR A 455 SWS P07302 ALA 586 VARIANT SEQRES 1 A 587 MET SER ASP GLY THR SER GLN PRO ASP GLY GLY ASN ALA SEQRES 2 A 587 VAL HIS SER ALA ALA ARG VAL GLU ARG ALA ALA ASP GLY SEQRES 3 A 587 PRO GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SEQRES 4 A 587 VAL GLY VAL SER THR GLY SER TYR ASP ASN GLN THR HIS SEQRES 5 A 587 TYR ARG PHE LEU GLY ASP GLY TRP VAL GLU ILE THR ALA ⌨️ 快捷键说明
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