anolis.nex

功能强大的matlab写的bayes分类器

	Anolis_paternus      TCTTCCTCCTACCACTTACACCCATAATTTTATTAT-----AAAAACTTAGGAT---TAAATA----AACCAAGGGCCTTCAAAGCCCAAAATATGGGTTAAACACCCATAGTTTTTG------TAAGACTTGTGAAA?ACTATTACACATCTCCTGAATGCAACTCAAGCACTTTTATTAAGCTAAAGCCTCA--CTGAATAGGCGGGCTTTGATCCCACGACAA--ATTAATTAACAGCTAATTACCC
	Anolis_sagrei        TTCTTTTACTTCCACTAACACCACTAATACTTCTAT-----AAAAACTTAGGAT---AACCTA----AACCAAGGGCCTTCAAAGCCCTAAATAAGCTAGACG--CCCTTAGTTTTTG------TAAGACTTGTGAAAAACTAATTCACATCTCATGAATGCAACTCAAGCACTTTTATTAAGCTAAAGCCTT---ATGAATGAGCGGGCCTCGATCCCACAAAAA--ATTAATTAACAGCTAATTACCC
	Anolis_strahmi       TATTTTTACTTCCAATATCCCCAATACTTCTACTTT-----AAAGACTTAGGAT----AATTAA---AACCAAGAGCCTTCAAAGCTCAAAATAAGGGTGCAACCCCCTTAGTTTTTG------TAAGACTTGCACCATACTATAATGCATCTCCTGAATGCAACTCAAGCGATTTAATTAAACTAAAGCTTTA--CTGAACAGGCGGGCCTCGATCCCACGATAA--ATTAATTAACAGCTAATTACCC
	Anolis_stratulus     TTCTTTTACCACTTACACCACTAATTTTACTA---T-----AAAAACTTAGGAT--AATCTTA----AACCAAGAGCCTTCAAAGTTCAAAATAAGGGTGCGATTCCCTTAGTTTTTG------TAAGACTTGTAAAATACTAATTTACATCTCATGAATGCAACTCAAGCGCTTTTATTAAACTAAAGCCTCC--CTGAACAGGCGGGCCTTGATCCCACGACAA--ATTAATTAACAGCTAACTGCCC
	Anolis_valencienni   TTCTTCTCCTTCCTCTTACCCCGCTAATACTATTAT-----AAAAACTTAGGAT-???????A----AACCAAGGGCCTTCAAAGCCCTAAATAAGGG?CCCACCCCCTTAGTTTTTG------TAAGACTTATGGGTGTCTACTCCATATCTCCTGAATGCAAATCAAACACTTTTATTAAGCTAAAGCCTTGA-CCAAATAGGTGGGCCTTGATCCC??AAAAA---TTAGTTAACAGCTAATTACCC
	Anolis_vanidicus     TCTTCATACTACCCTTAACACCAACAATCTTAATAT-----AAAGACTTAGGAT----AAACA----AACCAAGAGCCTTCAAAGCTCCAAACAAGGGTGCAACCCCCTTAGTTTTTG------TAAGACCTGT-AAATACTAATTTACATCTCCTGAATGCAACTCAAGCGCTTTAATTAAGCCAAGACCTAA--CTGAATAGACGGGCTTCGATCCCGCGATAA--GTTAATTAACAGCTAACCACCC
	Diplolaemus_darwinii TAATATTACTACCAATAACCCCACTAATATTA---TA----AGAGACTTAGGCT----AACTAACCAAACCAAGGGCCTTCAAAGCCCAA?ATAGAGATGAAAACCCTCTAGTTTCTGA-----TAAGACCTGTGTAATACTAAAACACATCTCCTGAATGCAACCCAGACACTTTAATTAAGCTAAGGCCTCC--CTAGATAGGGGGGCTTTGATCCCACGAAAC--TTTAGTTAACAGCTAAACACCC

	Anolis_ahli          AAGCCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCCTTTT--GGGCTCATCTTCAAACTTGCATTTTGATGTGG----GTCACTTCGGGACTTT-----GATAAAGAAAGGAATTAAACCAATGTAAGTAGGACTACAGCCTATCGCCT-AACACTCGGCCAATTTACCTGTGTCAACTAATCGTTGA
	Anolis_aliniger      AAACCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCCTTTA--GGGCTCTTCTTCAAACTTGCATTTTGACGTGG----AACACCCCGGGACTTT-----GATAAAGAGGGGAATTAAACCCCTATTAATGGGTCTACAGCCCACCGCCT-AACATTCGGCCACCCTACCTGTGTCTATTAATCGTTGA
	Anolis_alutaceus     AAACCAACGGGCTTCTATTCG-CTTCCCCCGTACGGGAG-AAGCCCCGGAGCC-TTTAA-GGGCTCTTCTTCAAACTTGCAATTTGACGTAAATCACTTACTTCGGGGCTT------GATAAAGAAAGGAATTAAACCAATGTGAATAGGACTACAGCCTACCGCCT-ACCATTCGGCCACTTTACCTGTGTTTATTAATCGTTGA
	Anolis_angusticeps   AAACCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCC?CCGAGCC-TTTA--GGGCTCCTCTTCAGACTTGCATTTTGACGTGAA---AACACTTCGGGACTTTT----GATAAAGAAAGGAATTAAACCTGTGTAAGTAGGTCTACAGCCTACTGCCT-AACACTCGGCCACTTTACCTGTGTTTATTAACCGTTGA
	Anolis_bahorucoensis AATCCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCTTTTTA-GGGCTCCTCTTCAAACTTGCATTTTGACGTGA----AACACCCCGGGACTGCAT---GATAAGGAAGGGAATTGAGCCCCTATAAATAGGACTACAGCCTACCACCT-AGCATTCGGTCACCTTACCTGTGTCCATTAATCGTTGA
	Anolis_barahonae     AAACCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCCTTTT--GGGCTCTTTTTCAAATTTGCATTTTGATGTGGA----ACACTTCGAGACTTT-----GATAAATAAAGGAATTAAACCAATGTAAGTAGGACTACAGCCTACTGCCT-AACATTCGGCCACTTTACCTGTGTC?????????????
	Anolis_brevirostris  TAGCCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCTATT--GGGGCTCTTCTTCAAACTTGCATTTTGACGTAA----AACACCTCGAGGCTAT-----GATAAAGAAAGGACTTGAACCAATATGGGTAGGTTTACAGCCTACCACCT-AAACCTCGGTCACTTTACCTGTGTCTATTAATCGTTGA
	Anolis_coelestinus   AAACCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCCTTTA--GGGCTCTTCTTCAAACTTGCATTTTGATGTGG----AACACCCCAGGACTT------GATGAGGAAGGGAATTAAACCCCTGTTAATGAGTCTACAGCTCACCACCT-AACACTCGGCCACCTTACCTGTGTCTA???????????
	Anolis_cristatellus  AAACCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCAATA?--GGGCT?GCTTTCAAA?TTGCATTTTGACGTGA----AATACTACAGGACTCGT----AGTAAAGAAAGGGTTTAAA?CAATATAAA?AGATTTACA?GCTACCGCCT-AA?AGTCAGCCACTTTACCTGTGTCCATTAAGCGTTAA
	Anolis_cuvieri       AAACCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGGCCCGGAGCCCTTTT--GGGCTCTTCTTCAAATTTGCATTTTGACGTGAA----ACACTTCAGGACTTT-----GATAAAGAAGGGAATTAAACCAATGTAAGTAGGACTACAGCCTACCGCCT-AACATTCGGCCACTTTACCTGTGTTTATTAATCGTTGA
	Anolis_distichus     TAACCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCCTTTT--GGGCTCTTCTTCAAACTTGCATTTTGACGTAA----AACACCTCGAGGCTTT-----GATAAAGAAAGGGCTTCAACCAATATAAATAAGTTTACAACTTACCGCCT-AAATTTCGGCCACTTTACCTGTGTTCATTAATCGTTGA
	Anolis_equestris     AAACCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCCTATT-GGGGCTCTTTTTCAAACTTGCATTTTGACGTGA----AACACTTCAGGGCTTT-----GATAAGAAAAGGAATTAAACCTAT??????AGGACTACAGCCTACCGCCT-AACACTCAGCCATCTTACCTGTGTCTATTAACCGTTA?
	Anolis_garmani       AATCCAGCGGGCTTCTCTTTAGCTTCTCCCGTACGGGAG-AAGCCCC?GGGCCCTTTA--GGGCTCTTTTTCAAACTTGCATTTTGATGTGA----ATCACTTCAGAGCTGT-----GATAAAGAAAGGAATTAAACCAATGTAAA??GGTCTACAGCCTACCGCCT-AACATTCGGCCACTTTACCTGTGTCTATTAATCGTT??
	Anolis_grahami       AATCCACGGG?CTTCTATTTAGCTTCTCCCGTACGGGA--AAG?CCCGGAGCCCTTTA--GGGCTCTTTTTCAAACTTGCATTTTGATGTGG----ATCACTTCAGGGCTGT-----GATAAAGAAAGGAATTAAACCAATGTAAATAGGACTACAGCCTACCGCCT--ACATTCGGCCACTTTACCTGTGTTCATTAATCGTT??
	Anolis_insolitus     TAACCAGCGGGCTTTTATTCG-CTTCTCCCGTACGGGAG-AA??C?CGGAGCCTTTTT--GGGCTCCTTTTCAAACTTGCATTTTGACGTGA----AGCACTTCGGGACTTT-----GATAAAGAAAGGAATTAAACCAATGTAAATAGGACTACAGCCTACCGCCT-AGCACTCGGCCACTTTACCTGTGTTTATT?????????
	Anolis_krugi         ATTCCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCCCTTA--GGGCTCTTTTTCAAACTTGCATTTTGACGTGA--AAGCCACTTCAAGGCTGT-----GACAAAGAAAGGATTCAAACCAATATAAGTAAGTTTACAGCCTACCGCCT-AATATTCGGCCACTTTACCTGTGTCTATTAATC?????
	Anolis_lineatopus    AAGCCAGCGGGCTTCTATTTG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCTTTAA--GGGCTCCTTTTCAAACTTGCATTTTGATGTGA----ATCACTTCGGGGCTGT-----GATAAAGAAAGGAATTAAACCAATGTAAATAGGACTACAGCCTACCGCCT-ACCATTCGGCCACTTTACCTGTGTTTATTAATCGTTGA
	Anolis_loysiana      TAACCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCTTTTA--TGGCCCTTCTTCAAACTTGCATTTTGACGTGAA---AACACTACGAGACTCT-----GATAAAGAAAGGAATCAAACCAGTGTAAGTAGGTCTACAGCCTACCGCCT-AACATTCGGCCACTTTACCTGTGTTTATTTACCGTTGA
	Anolis_luteogularis  AAACCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCC-TATT-GGGGCTCTTTTTCAAACTTGCATTTTGACGAGA----AACACTTCAGGGCTTT-----GATAAGAAAAGGAATTAAACCTATGTAAATAGGACTACAGCCTACCGCCT-AACACTCGGCCATCTTACCTGTGTCTATCAATCGTTGA
	Anolis_marcanoi      AAACCAGCGGGCTTCAATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCTTTTA--GGGCTCATCTTTAAATTTGCATTTTAACGTAT----AACACCTCGGGACTTT-----GATAAAGAAGGGG-TTTAGCCCTCATGGGTGGAGCTACAAGCCACCGCCT-ATTATTCGGCCACTTTACCTGTGTTTTTTACTCGTTGA
	Anolis_occultus      AAACCAGCGGGCTTCTACTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCC-TTTT-GGGGCTCCTTTTCAAACTTGCATTTTGACGTGAA---AACACTTCGAGACTTT-----AATAAG?AAAGGAATCAAACCCC?G?AAATAGGACTACAGCCTACCGCCT-AACACTCGGCCACCTTACCTGTGTCTATTAATCGTTA?
	Anolis_olssoni       AAACCAGCGGGCTTCTACTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCGTTT--GGGGCTCTTCTTCAAACTTGCATTTTGATGTGA----AACACTTCGGGACTTT-----GATAAAGAAAGGAATTAAACCAATGTTAATAGGACTACAGCCTACTGCCT-ATCATTCGGCCACTTTACCTGTGTTCATTAAT??????
	Anolis_ophiolepis    AAACCAGCGGGCTTCCATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCTTTTA--GGGCTCCTCTTCAAACTTGCATTTTGATGTGG----GTCACTTCGGGGCTTT-----GATAAAGAAAGGAATTGAACCAATGTTAGTAGGACTACAGCCTACCGCCT-ATTACTCAGCCACTTTACCTGTGTCTATTAATCGTTGA
	Anolis_paternus      AAACCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCC-TTTA--GGGCTCTTCTTCAAACTTGCATTTTGATGTGGA----ACACTTCGGGACTTT-----GATAAATAAAGGAATTA?ACCAATGTAAATAGGACTACAGCCTACTGCCT-AACACTCGGCTACTTTACCCGTGTTTATTAACCGTTAT
	Anolis_sagrei        AAACCAGCGGGCTTCCATTCG-CTTCTCCCGTACGGGAG-AA????CGGAGCCTTTTA--GGGCTCCTTTTCAAACTTGCATTTTGACGTGG----GTCACTTCGGGGCTTT-----GATAAAGAAAGGAATTGAACCAATGTTAGTAGGACTACAGCCTACCGCCT-ATCACTCGGCCACTTTACCTGTGTCTATTAATCGTTGA
	Anolis_strahmi       AAACCAGCGGGCTTCAATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCCTTTTA--GGGCTCATCTTTAAACTTGCATTTTAATGTAGT---AACACTTCGGGGCTTT-----GGTACAGAAAGGAATT-AACCAATGTGAGTAGGACTACAGCCTACCGCCT-GACATTCGGCCACTATACCTGTGTACCTTAATCGTTGA
	Anolis_stratulus     TAACCAGCGGGCTTCTATTCG-CTTCTCCCGTACGGGAG-AAGCCCCGGAGCC-TTTA--AGGCTCTTCTTCAAACTTGCATTTTGACGTGA---AAACACTACAGGGCTTTT----AGTAAAGAAAGGGATTAAACCAATGTAAGTAAGTTTACAGCTTACCGCCT-AACACTCAGCCACTTTACCTGTGTTTATTAATCGTTGA
	Anolis_valencienni   AAACCAGAGGGCTTCCATTTG-CTTCTCCCGTACGGGAG-AACCCC?GGAGCCTTTCA--GGGCTCATTTTCAAACTTGCATTTTGATGTGA----ATCACTTCGGGGCT-------GATAAAGAAAGGAATTAAACCAATGTAAATAGGACTACAGCCTACCGCCT-ACCATTCGGCCACTTT??????????????????????
	Anolis_vanidicus     AAACCAGCGGGCTTCAATTCTGCTTCTCCCGTACGGGAG-AAGCCCCGGAGCC-TTTA-GGGGCTCTTCTTCAAACTTGCAATTTGACGTAA----GTCACTTCGGAGCTGT---GTGATAAAGAAAGGAATTAAACCAATATTAGTAGGACTACGGCCTACCGCCT-ATCATTCGGCCACTTTACCAGTGTTTATTAATCGTTGA
	Diplolaemus_darwinii AAACCAGCGGGCTTCTATCCG-CTTCTCCCGCACGGGAG-AA??CCCGGAGCCCTTTAT-GGGCTC---TTCAAATTTGCATTTTGACGTGCT---TACACCACAGGACTTT-----GATAAAAAGAGGAGTTAAACCCCTGTAAATAGGACTACAGCCTACCTCCTAAACGCTCGGCCATTTTACCTGTGTTTATTAA???????
	;
end;

begin mrbayes;
	[The following line sets up a GTR model with gamma-distributed rate variation
	 and a proportion of invariant sites. Note that proportion of invariants, gamma
	 shape (alpha), revmat rates and state frequencies will all be estimated automatically
	 using the default priors unless you specify otherwise using prset. The starting values
	 are set arbitrarily for substitution model parameters and it normally makes little
	 sense to override this behavior by forcing specific values onto any parameter.]
	lset nst=6 rates=invgamma;
end;