📄 dens.py
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#! /usr/bin/env python################################################################################ ## Copyright 2005 University of Cambridge Computer Laboratory. ## ## This file is part of Nprobe. ## ## Nprobe is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 2 of the License, or ## (at your option) any later version. ## ## Nprobe is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with Nprobe; if not, write to the Free Software ## Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ## ################################################################################################################################################################ ## Smooth time series data by averaging over specified period (in s)## ## #### ############################################################################ import stringimport globimport osimport sysimport nprobefrom sys import argvimport getoptfrom signal import *from np_plot import * ##############################################################################def usage(): print 'usage dens.py -x<period s> -y<period s> <data file>' sys.exit(1) ############################################################################################################################################################def get_data(file): data = [] f = open(file, 'r') n = 0 line = 0 while 1: s = f.readline() line = line +1 if not len(s): #print 'empty' break if s[0] == '#' or s[0] == ' ' or s[0] =='\n': #print 'comment' continue vs = string.split(s) try: data.append([string.atof(vs[0]), string.atof(vs[1])]) n = n + 1 except IndexError: print 'Malformed data line %d' % (line) sys.exit (1) return (data, n) ##############################################################################def bucket(d, xp, yp): d.sort() dout = [] slen = 0 xstart = d[0][0] xt = xstart + xp print 'xstart=%f xp = %f' % (xstart, xp) print 'xt now %.3f' % (xt) yvals = [] for e in d: x = e[0] v = e[1] print e[0] if x > xt: if len(yvals): yvals.sort() dens = 0 ystart = yvals[0] yt = ystart + yp for yv in yvals: y = yv - ystart if y > yt: dout.append((xt, yt-(yp/2.0), dens)) print 'app %f %f %d' % (xt, yt-(yp/2.0), dens) slen += 1 while yt < y: yt += yp #print 'yt now %.3f' % (yt) dens = 0 dens += 1 if dens: dout.append((xt, yt-(yp/2.0), dens)) print 'app %f %f %d' % (xt, yt-(yp/2.0), dens) slen += 1 while xt < x: xt += xp print 'xt now %.3f' % (xt) yvals = [] yvals.append(v) #print 'appending yval %.3f' % (v) if len(yvals): print 'xt now %.3f' % (xt) yvals.sort() dens = 0 ystart = yvals[0] yt = ystart + yp for yv in yvals: y = yv - ystart if y > yt: dout.append((xt, yt-(yp/2.0), dens)) print 'app %f %f %d' % (xt, yt-(yp/2.0), dens) slen += 1 while yt < y: yt += yp dens = 0 dens += 1 if dens: dout.append((xt, yt-(yp/2.0), dens)) print 'app %f %f %d' % (xt, yt-(yp/2.0), dens) slen += 1 for d in dout: print '%10.3f %10.3f %.d' % (d[0], d[1], d[2]) return (dout, slen) ############################################################################## def main(): xp = 1.0 yp = 1.0 try: optlist, args = getopt.getopt(sys.argv[1:], 'x:y::h') except getopt.error, s: print 'dens: ' + s usage() sys.exit(1) for opt in optlist: if opt[0] == "-h": usage(scriptname) if opt[0] == "-x": xp = string.atof(opt[1]) if opt[0] == "-y": yp = string.atof(opt[1]) if not xp: print 'No x period specified - defaulting to 1.0' usage() if not yp: print 'No x period specified - defaulting to 1.0' usage() if len(args) == 1: #print args data, dlen = get_data(args[0]) else: print 'No data file specified' usage() basepath = args[0] dout, slen = bucket(data, xp, yp) of = raw_input('Save as: ') f = open(of, 'w') for d in dout: f.write('%10.3f %10.3f %.d\n' % (d[0], d[1], d[2])) return ############################################################################### Call main when run as scriptif __name__ == '__main__': main()
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