📄 stcox_p.ado
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*! version 6.0.3 24sep2004
program define stcox_p, sort
version 6, missing
/* Step 1:
place command-unique options in local myopts
Note that standard options are
LR:
Index XB Cooksd Hat
REsiduals RSTAndard RSTUdent
STDF STDP STDR noOFFset
SE:
Index XB STDP noOFFset
*/
local myopts "XB Index STDP HR CSNell DEViance CCSnell CMGale"
/* Step 2:
call _propts, exit if done,
else collect what was returned.
*/
_pred_se "`myopts'" `0'
if `s(done)' { exit }
local vtyp `s(typ)'
local varn `s(varn)'
local 0 `"`s(rest)'"'
/* Step 3:
Parse your syntax.
*/
syntax [if] [in] [, `myopts' noOFFset]
/* Step 4:
Concatenate switch options together
*/
local type "`xb'`index'`stdp'`hr'`csnell'`deviance'`ccsnell'`cmgale'"
/* Step 5:
quickly process default case if you can
Do not forget -nooffset- option.
*/
/* Step 6:
mark sample (this is not e(sample)).
*/
marksample touse
if "`e(cmd2)'"=="stcox" {
st_is 2 full
qui replace `touse' = 0 if _st==0
}
/*
if "`type'"=="" | "`type'"=="hr" {
if "`type'"=="" {
di in gr "(option hr assumed; relative hazard)"
}
tempvar xb
_predict `vtyp' `varn' if `touse', /* default */ `offset'
label var `varn' "relative hazard"
exit
}
*/
if "`type'"=="xb" | "`type'"=="index" | "`type'"=="stdp" {
_predict `vtyp' `varn' if `touse', `type' `offset'
exit
}
st_is 2 full
if "`type'"=="csnell" {
if "`e(mgale)'"=="" { Error csnell }
gen `vtyp' `varn' = (_d!=0) - `e(mgale)' if `touse'
if "`_dta[st_id]'" != "" { local part "partial " }
label var `varn' "`part'Cox-Snell residual"
exit
}
if "`type'"=="" | "`type'"=="hr" {
if "`type'"=="" {
di in gr "(option hr assumed; relative hazard)"
}
tempvar xb
qui _predict `vtyp' `xb' if `touse', xb `offset'
qui gen `vtyp' `varn'=exp(`xb')
label var `varn' "relative hazard"
exit
}
/* Step 7:
handle options that take argument one at a time.
Comment if restricted to e(sample).
Be careful in coding that number of missing values
created is shown.
Do all intermediate calculations in double.
*/
/* Step 8:
handle switch options that can be used in-sample or
out-of-sample one at a time.
Be careful in coding that number of missing values
created is shown.
Do all intermediate calculations in double.
*/
if "`type'"=="deviance" {
if "`e(mgale)'"=="" { Error deviance }
tempvar cmg
qui predict double `cmg' if `touse', cmgale `offset'
gen `vtyp' `varn' = sign(`cmg')*sqrt( /*
*/ -2*(`cmg' + (_d!=0)*(ln((_d!=0)-`cmg')))) if `touse'
label var `varn' "deviance residual"
exit
}
if "`type'"=="ccsnell" {
if "`e(mgale)'"=="" { Error ccsnell }
if "`_dta[st_id]'" == "" {
predict `vtyp' `varn' if `touse', csnell `offset'
exit
}
tempvar cs
qui predict double `cs' if `touse', csnell `offset'
sort `touse' `_dta[st_id]' _t
qui by `touse' `_dta[st_id]': /*
*/ replace `cs'=cond(_n==_N,sum(`cs'),.) if `touse'
gen `vtyp' `varn' = `cs' if `touse'
label var `varn' "cum. Cox-Snell residual"
exit
}
if "`type'"=="cmgale" {
if "`e(mgale)'"=="" { Error cmgale }
if "`_dta[st_id]'" == "" {
gen `vtyp' `varn' = `e(mgale)' if `touse'
label var `varn' "Martingale resid."
exit
}
tempvar mg
sort `touse' `_dta[st_id]' _t
qui by `touse' `_dta[st_id]': /*
*/ gen double `mg'=cond(_n==_N, sum(`e(mgale)'), .) if `touse'
gen `vtyp' `varn' = `mg' if `touse'
label var `varn' "cum. Martingale resid."
exit
}
/* Step 9:
handle switch options that can be used in-sample only.
Same comments as for step 8.
*/
* qui replace `touse'=0 if !e(sample)
/* Step 10.
Issue r(198), syntax error.
The user specified more than one option
*/
error 198
end
program define Error
#delimit ;
di in red
"`1' may not be calculated unless you specified option mgale(newvar)" _n
"on the stcox command." ;
#delimit cr
exit 198
end
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