📄 mod2sparse.c
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/* MOD2SPARSE.C - Procedures for handling sparse mod2 matrices. *//* Copyright (c) 2000 by Radford M. Neal * * Permission is granted for anyone to copy, use, or modify this program * for purposes of research or education, provided this copyright notice * is retained, and note is made of any changes that have been made. * * This program is distributed without any warranty, express or implied. * As this program was written for research purposes only, it has not been * tested to the degree that would be advisable in any important application. * All use of this program is entirely at the user's own risk. */#include <stdlib.h>#include <stdio.h>#include <math.h>#include "alloc.h"#include "intio.h"#include "mod2sparse.h"/* ALLOCATE AN ENTRY WITHIN A MATRIX. */static mod2entry *alloc_entry( mod2sparse *m){ mod2block *b; mod2entry *e; int k; if (m->next_free==0) { b = chk_alloc (1, sizeof *b); b->next = m->blocks; m->blocks = b; for (k = 0; k<Mod2sparse_block; k++) { b->entry[k].left = m->next_free; m->next_free = &b->entry[k]; } } e = m->next_free; m->next_free = e->left; e->pr = 0; e->lr = 0; return e;}/* ALLOCATE SPACE FOR A SPARSE MOD2 MATRIX. Prints a message and exits if there is not enough memory available for the matrix. The matrix will be set to all zeros (ie, have no entries). */mod2sparse *mod2sparse_allocate( int n_rows, /* Number of rows in matrix */ int n_cols /* Number of columns in matrix */){ mod2sparse *m; mod2entry *e; int i, j; if (n_rows<=0 || n_cols<=0) { fprintf(stderr,"mod2sparse_allocate: Invalid number of rows or columns\n"); exit(1); } m = chk_alloc (1, sizeof *m); m->n_rows = n_rows; m->n_cols = n_cols; m->rows = chk_alloc (n_rows, sizeof *m->rows); m->cols = chk_alloc (n_cols, sizeof *m->cols); m->blocks = 0; m->next_free = 0; for (i = 0; i<n_rows; i++) { e = &m->rows[i]; e->left = e->right = e->up = e->down = e; e->row = e->col = -1; } for (j = 0; j<n_cols; j++) { e = &m->cols[j]; e->left = e->right = e->up = e->down = e; e->row = e->col = -1; } return m;}/* FREE SPACE OCCUPIED BY A SPARSE MOD2 MATRIX. The pointer passed and all pointers to entries within this matrix should no longer be used after mod2sparse_free returns. */void mod2sparse_free( mod2sparse *m /* Matrix to free */){ mod2block *b; free(m->rows); free(m->cols); while (m->blocks!=0) { b = m->blocks; m->blocks = b->next; free(b); }}/* CLEAR A SPARSE MATRIX TO ALL ZEROS. The space occupied by entries in the matrix is freed for general use. */void mod2sparse_clear( mod2sparse *r){ mod2block *b; mod2entry *e; int i, j; for (i = 0; i<mod2sparse_rows(r); i++) { e = &r->rows[i]; e->left = e->right = e->up = e->down = e; } for (j = 0; j<mod2sparse_cols(r); j++) { e = &r->cols[j]; e->left = e->right = e->up = e->down = e; } while (r->blocks!=0) { b = r->blocks; r->blocks = b->next; free(b); }}/* COPY A SPARSE MATRIX. The first matrix is copied to the second, which must already have been allocated, and must have dimensions at least as big as the first. The space occupied by entries in the second matrix is freed for general use (which may include being reused immediately for the copies of the entries in the first matrix). */void mod2sparse_copy( mod2sparse *m, /* Matrix to copy */ mod2sparse *r /* Place to store copy of matrix */){ mod2entry *e; int i; if (mod2sparse_rows(m)>mod2sparse_rows(r) || mod2sparse_cols(m)>mod2sparse_cols(r)) { fprintf(stderr,"mod2sparse_copy: Destination matrix is too small\n"); exit(1); } mod2sparse_clear(r); for (i = 0; i<mod2sparse_rows(m); i++) { e = mod2sparse_first_in_row(m,i); while (!mod2sparse_at_end(e)) { mod2sparse_insert(r,e->row,e->col); e = mod2sparse_next_in_row(e); } }}/* COPY COLUMNS OF A SPARSE MOD2 MATRIX. Copies selected columns of the first matrix to the second matrix (which must already exist, and have at least as many rows as the first matrix). The columns to copy are given in order as an array of length the same as the number of columns in the second matrix; duplicates are allowed. */void mod2sparse_copycols( mod2sparse *m, /* Matrix to copy */ mod2sparse *r, /* Place to store copy of matrix */ int *cols /* Index of columns to copy, from 0 */){ mod2entry *e; int j; if (mod2sparse_rows(m)>mod2sparse_rows(r)) { fprintf(stderr, "mod2sparse_copycols: Destination matrix has fewer rows than source\n"); exit(1); } mod2sparse_clear(r); for (j = 0; j<mod2sparse_cols(r); j++) { if (cols[j]<0 || cols[j]>=mod2sparse_cols(m)) { fprintf(stderr,"mod2sparse_copycols: Column index out of range\n"); exit(1); } e = mod2sparse_first_in_col(m,cols[j]); while (!mod2sparse_at_end(e)) { mod2sparse_insert(r,e->row,e->col); e = mod2sparse_next_in_col(e); } }}/* PRINT A SPARSE MOD2 MATRIX IN HUMAN-READABLE FORM. The output consists of one line per row, of the form row: col col col ... where 'row' is the index of the row, and the 'col' entries are the indexes of columns that are non-zero in that row. Indexes start at zero. The number of columns is not indicated in the output. */void mod2sparse_print( FILE *f, mod2sparse *m){ int rdigits, cdigits; mod2entry *e; int i; rdigits = mod2sparse_rows(m)<=10 ? 1 : mod2sparse_rows(m)<=100 ? 2 : mod2sparse_rows(m)<=1000 ? 3 : mod2sparse_rows(m)<=10000 ? 4 : mod2sparse_rows(m)<=100000 ? 5 : 6; cdigits = mod2sparse_cols(m)<=10 ? 1 : mod2sparse_cols(m)<=100 ? 2 : mod2sparse_cols(m)<=1000 ? 3 : mod2sparse_cols(m)<=10000 ? 4 : mod2sparse_cols(m)<=100000 ? 5 : 6; for (i = 0; i<mod2sparse_rows(m); i++) { fprintf(f,"%*d:",rdigits,i); e = mod2sparse_first_in_row(m,i); while (!mod2sparse_at_end(e)) { fprintf(f," %*d",cdigits,mod2sparse_col(e)); e = mod2sparse_next_in_row(e); } fprintf(f,"\n"); }}/* WRITE A SPARSE MOD2 MATRIX TO A FILE IN MACHINE-READABLE FORM. Returns one if successful, zero if an error of some sort occurred. The data written to the file is machine but not human readable. It consists of negative integers giving row indexes (starting at 1), which apply until the next row index, and positive integers giving column indexes (starting at 1) for a non-zero entry in the matrix. A zero index is written at the end. Data is written one byte at a time using intio_write so that it will be readable on a machine with a different byte ordering. */int mod2sparse_write( FILE *f, mod2sparse *m){ mod2entry *e; int i; intio_write(f,m->n_rows); if (ferror(f)) return 0; intio_write(f,m->n_cols); if (ferror(f)) return 0; for (i = 0; i<mod2sparse_rows(m); i++) { e = mod2sparse_first_in_row(m,i); if (!mod2sparse_at_end(e)) { intio_write (f, -(i+1)); if (ferror(f)) return 0; while (!mod2sparse_at_end(e)) { intio_write (f, mod2sparse_col(e)+1); if (ferror(f)) return 0; e = mod2sparse_next_in_row(e); } } } intio_write(f,0); if (ferror(f)) return 0; return 1;}/* READ A SPARSE MOD2 MATRIX STORED IN MACHINE-READABLE FORM FROM A FILE. The data is expected to be in the format written by mod2sparse_write. The value returned is zero if some sort of error occurred (either an error reading the file, or data not in the right format). The file is left positioned after the last of the data read. Other data (such as another matrix) may follow. */mod2sparse *mod2sparse_read( FILE *f){ int n_rows, n_cols; mod2sparse *m; int v, row, col; n_rows = intio_read(f); if (feof(f) || ferror(f) || n_rows<=0) return 0; n_cols = intio_read(f); if (feof(f) || ferror(f) || n_cols<=0) return 0; m = mod2sparse_allocate(n_rows,n_cols); row = -1; for (;;) { v = intio_read(f); if (feof(f) || ferror(f)) break; if (v==0) { return m; } else if (v<0) { row = -v-1; if (row>=n_rows) break; } else { col = v-1; if (col>=n_cols) break; if (row==-1) break; mod2sparse_insert(m,row,col); } } /* Error if we get here. */ mod2sparse_free(m); return 0; }/* LOOK FOR AN ENTRY WITH GIVEN ROW AND COLUMN. If the given element is non-zero, a pointer to its entry is returned. If the element is zero (and hence has no entry), a zero pointer is returned. This procedure first looks to see if the entry is the last in its row or in its column (or would be if it existed). If it isn't, it searches in parallel from the beginning of the row and the beginning of the column, so that the operation will be fast if either the row or the column is sparse. */mod2entry *mod2sparse_find( mod2sparse *m, int row, int col){ mod2entry *re, *ce; if (row<0 || row>=mod2sparse_rows(m) || col<0 || col>=mod2sparse_cols(m)) { fprintf(stderr,"mod2sparse_find: row or column index out of bounds\n"); exit(1); } /* Check last entries in row and column. */ re = mod2sparse_last_in_row(m,row); if (mod2sparse_at_end(re) || mod2sparse_col(re)<col) { return 0; } if (mod2sparse_col(re)==col) { return re; } ce = mod2sparse_last_in_col(m,col); if (mod2sparse_at_end(ce) || mod2sparse_row(ce)<row) { return 0; } if (mod2sparse_row(ce)==row) { return ce; } /* Search row and column in parallel, from the front. */ re = mod2sparse_first_in_row(m,row); ce = mod2sparse_first_in_col(m,col); for (;;) { if (mod2sparse_at_end(re) || mod2sparse_col(re)>col) { return 0; } if (mod2sparse_col(re)==col) { return re; } if (mod2sparse_at_end(ce) || mod2sparse_row(ce)>row) { return 0; } if (mod2sparse_row(ce)==row) { return ce; } re = mod2sparse_next_in_row(re); ce = mod2sparse_next_in_col(ce); }}/* INSERT AN ENTRY WITH GIVEN ROW AND COLUMN. Adds a new entry at the given row and column. If such an entry already exists, nothing is done (this is not considered to be an error). This procedure first looks to see if the entry belongs at the end of the the row and/or column. If it doesn't, it searches for its place in the row or column starting from the beginning. Inserting an entry may require allocating space from the general memory pool, which may fail, in which case a message is printed and the program terminated. */mod2entry *mod2sparse_insert( mod2sparse *m, int row, int col){ mod2entry *re, *ce, *ne; if (row<0 || row>=mod2sparse_rows(m) || col<0 || col>=mod2sparse_cols(m)) { fprintf(stderr,"mod2sparse_insert: row or column index out of bounds\n"); exit(1); } /* Find old entry and return it, or allocate new entry and insert into row. */ re = mod2sparse_last_in_row(m,row); if (!mod2sparse_at_end(re) && mod2sparse_col(re)==col) { return re; } if (mod2sparse_at_end(re) || mod2sparse_col(re)<col) { re = re->right; } else { re = mod2sparse_first_in_row(m,row); for (;;) {
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