bsubt168_whole.nuc

一个自制的生物信息学程序。 这个程序目的是在基因组文件bsubt168_whole.nuc（部分）中查找设置文件ss.ini所记录的短核苷酸序列CTTAAG（这种短核苷酸一般称寡核苷酸）及其互补

agaggccctggaagcatatccagatgcgaaaggcttggtactgaccaatccgacatatta
cggacatagtgctgatttgactgagatcattactgaagcccatcattacgggattcctgt
tttggtcgatgaagcgcatggcgcacattttattttaggtgagccttttccggtctcagc
tttaaaaatgggggcagatattgttgttcagtcggcccacaaaacgttgccagccatgac
gatgggttcttatttgcatctcaacagcagctgcaggattaacagggatcgggtggcaga
gtatttaaaccgattacaaagcagcagcccgtcttatccgattatggcttcgttagatat
tgcccgcgcttatgtacagcatattatagaagaacaaaagctttctgacattctgcagcg
gatagaaacacttaaacaaacgtttgattcacttacaaatgcagaagctgttaaccctgc
taatccactgatcatcacggatccgctaaagctcacaattcgttcaaaacgcgggcattc
tggctatacgctgcaaagcattttagagcgtgccaacatattcactgagcttgctgatga
aaatcaagttctgctcgttctcccattgggaggaaaacggagaataaacgctgaaatcat
tagaagcatcgatgaagagattgagaaaacgcctccggatcagacgtttgtttctgcaga
atggggtgtgcagcctgttactgtcttgccttatccaaaaaaggtcttacattcgtttaa
gaaagaatatgtgagctttgaggaagcagctggccggcttaatgcagaagatatcatccc
ttatcctccgggtatcccgatgattatggcgggagaaagaataacaaaagaaagtgtgca
aaagctcagccgcttgatcagcatgaaaacgcatgttcaagggaatatgaaaatcaaaga
gaaacaactacttgtttatatagaagaggagaaatcatgagcggtttatttattacattc
gaaggtcctgaaggtgcagggaaaacgactgttctgcaggagatcaaaaacatactgaca
gcagaaggccttcaggttatggcaactcgagagccaggcggaatagatattgcagaacaa
attagagaggttattctgaatgagaacaatatattaatggacccaaaaacagaagctctc
ttatatgcggctgcaagacgccagcatttagttgaaaaagtaaaacctgctttagaacag
gggtttatcgttctttgcgacagattcatagacagtcctcttgcgtatcaaggatatgca
agagggcttggaattgatgaggttctgtccattaatgaatttgccattggagatatgatg
ccccatgtaacggtttatttttcaattgatccggaagaaggactgaagcgtatttacgca
aacggctcacgggagaaaaacaggctcgatttagaaaaactggactttcatacaaaagta
caagaaggttatcaagagctgatgaagcgatttccggaaagatttcattcagttgatgcc
gggcaatccaaagacctcgtcgttcaggatgttctaaaggtgatcgatgaagcgttgaaa
aaaattcaattgtgacctgtttcccaatagttgatataataatgtaaacgagatcacgtt
gtttccaatctaaaggaggccttcacagatgaaattgatagtggcagttgtacaagatca
ggacagcaacagacttttgaaaaccttaacggatcacaacttcagagtcacaaagcttgc
aacgacaggaggatttcttaaatcaggcaatacaacgtttatgatcggtgtcgaggatat
acgcgtcaataaagcgttgagtctcattaaagaaaacgggcagaaacgtgatcagatgat
tgcccctgtatctccaatgggtggaaatgctgattcctatgtcccttatccagtcgaagt
tgaagttggcggagcgacagtatttgtccttccagtcgatgaatttcatcaattttaagg
atctgaaactgtgaaaattaataaagatatacgtacatttatagataataagcagattcc
ctctgtgaaaacatctgagatcacagcatcgtttaaaacatcaatggaaaaccaaagcag
caaaatgaagcttgatcagcttaccaggctgttatctgatatagaagcatttggaaaaag
gctaacgaaatctcggaattttaaagacttagcgagatttaaaggacttgtgaaacgttt
tgtcaaagaagctgtggacagcggtctttcacatgaaacatcgaaaagctttgaccttta
cgggaacagcagaacgctgggacttgtgaaagaaatagatgacaaattgatacagcttac
ggaagagatgatggatcaggaaaaaccggcaattgatttgctggagcgtattggcgaaat
aaaaggtttattaattaacctttacacatagagagtgatacaatggcaatatcctggaag
gaaatgaacgagcttcagcccagagtgatgaagcttttatataatagtattgagaaggac
agactatcacacgcttatttgtttgaggggaaaaaaggaacaggcaagcttgatgccgcg
ctgcttcttgcaaaaagcttcttttgtctggagggtggcgcggagccttgtgagagctgc
cgaaactgtaaacggatagagtcagggaaccatcctgatctccatcttgttcagcctgat
ggcttatcaatcaaaaaggcgcaaattcaagcgctccaagaagagttttctaagacagga
cttgaatcgcataaaaagctgtatattatttcgcacgcagatcaaatgacagcaaatgcg
gcgaacagcctgctgaaatttttagaagaaccgaacaaagacacaatggccgtcctcatc
actgagcagccccaaaggttattggataccatcatttcaagatgccaaacccttcctttt
cagcctttgcagccgaaagcaattgaagacagactgatcgaacaggacgtctcgcctcat
atggcaaggcttctggccaacatgactaataatgtagcagaagcagtcgaattaagtcga
aatgatgagtttgcagagtctagagcgaaagtgataaaattgtatgaagtcctacaccag
cggaaaggacatgcttttttctttattcaagatcaatggatgccctttttcaaagaaaaa
acccatcaagaaatgggtcttgatatgctcttattgatatatcgtgatgtgttgtccatc
caaataggaaatgaagataaattgatttatcaagacttattccaatcaataaaacagcat
gcgctacaatcaacacaacaaagcgttacgaatcagatacttgctgttttagaagcaaag
aaacggcttcattccaatgtgaatgtacaaggattaatggagcacttggtgttaatgttg
caggagggataagcttgtacaatgtaattggtgtccgctttaagaaagcgggtaaaatat
attattttgatccgaatggatttcatatagaacatgacagctgcgtaattgtagaaactg
tcagaggcgttgagtacggccaggtcgtaattgcaaataaacaggtggatgagcatgatg
tggtgcttccccttcgaaaagtgatacgtgtggcagacgatcgcgatcttctcattgtag
aagaaaataaacaggaagcactatcagcatttgatatctgccaaaagaaagtgattgagc
atggcttggatatgaagctggtcgatgttgaattcacgtttgatcgcaataaagtcattt
tttacttcactgctgacggccgagtcgactttagagagcttgtaaaggatttggcttcta
tctttaagacaagaattgagctgcgccaaatcggagtgagggatgaggcaaaaatgctcg
gaggaatcggtccttgcggaagaatgctttgctgttcaacgtttcttggagattttgaac
ccgtttccattaaaatggccaaggatcagaacttgtctttaaatcctacgaagatttcgg
gtctttgcggacgattgatgtgctgtctaaaatatgagaacgatgagtatgagacggcaa
aagaacagcttccggatataggagaaatgattacgacagcaaacggtcccgcgaaggtcg
tcggactaaatattctggaacgggtgcttcaggtggaactgataaaccgtgaaaaagtga
tagaatatacttgggaagagctcttggaagagggcgtcgtatccgcacaaaccacagatt
aacgaggtgtggaaccttggataaaaaagagttatttgatacagtcattaacttagaaga
acaaattggctcactgtaccggcagctgggggatttgaagcagcatatcggtgagatgat
tgaggaaaatcatcatttacagcttgaaaacaagcatttgcgcaaacggctggacgatac
gacgcagcagattgaaaagttcaaagctgataaaaaagaatcaaaaacacagaagacaga
gcaaactgatataggggaaggatatgataatctggcacgtctgtatcaagaaggatttca
tatctgcaatgtccactatggaagtgttcgaaaagaggattgtcttttctgtctgtcatt
cttaaataaaaaatagggaaaaggcttccgcataagacgggagcctttttcaaaggtact
gaaaggataagaagatggtttcattacatgatgatgaaagattagattatttgctggcag
aggacatgaaaatcatacaaagcccaacagtgtttgctttttcgttggacgctgtgcttc
tgtccaaatttgcgtacgttccgattcaaaaagggaaaattgttgatttatgcaccggca
atggtattgtgccgctgctgctcagtacaagatcaaaagcagacattctgggagtcgaaa
ttcaagaaagactgcatgatatggctgttcgcagcgtggagtataataagttggacgatc
agatccagatcatacatgatgacctgaaaaacatgccggagaaacttggacataatcgat
atgatgttgtcacctgcaatccgccgtattttaaaacgccgaaacaaactgaacaaaaca
tgaacgagcatctccgaatcgcaagacatgaaatccactgcacgctggaggatgtcattt
cagtcagcagcaagctgctcaagcaagggggaaaagcagctcttgttcaccggccgggaa
ggcttctggagatttttgaactgatgaaggcttatcaaatcgagccgaaacgtgtacaat
ttgtctatccgaagcaagggaaagaagccaataccattttggttgaaggtatcaaaggcg
ggcgcccggatttgaaaattcttcctcccttattcgtatatgatgaacaaaatgaatata
caaaagaaatcaggaccattttatatggagacaaataaccatttcttctacgtcgtgaaa
tgtaaggacaatagctggtatgccgggtataccaacgatctgcataaacgagtgaaaacg
cacaatgatggaaagggcgcaaagtacacaaaagtaagacgtccggttgaattaattttt
gccgagagcttttcaacaaagcgggaagctatgcaggcggaatattatttcaaaaaacta
actcggaagaaaaaagagctttatatagaagaaaagcggaacagcaaggaggctgtatat
gttaaggcgccaaatgagctttaatggaaagtcggacatggggattctttacttggtccc
aaccccaatcggaaatttagaggatatgacattccgggcgatcgacacgctgaaatcagt
ggatgcgattgctgcggaagatacgaggcaaacgaaaaagctttgtcatgtatatgaaat
tgaaacaccgctcgtcagctatcacgaacacaataaagaaagcagtgggcacaaaattat
tgaatggctgaaatcgggaaaaaacattgctcttgtcagtgatgccggtctgccgacgat
ttctgatcccggagcggaaattgtaaaggattttacggatataggcggttatgttgttcc
gttgccgggagcaaatgctgcattaacagctcttattgcttcaggtattgtaccgcagcc
ttttttcttttacggttttctcaacagacagaaaaaagaaaagaagaaggagcttgaagc
ccttaaaaaacggcaggaaacgatcattttttatgaagcgccccacagattgaaggaaac
cttgtcagcgatggcagagatattaggagatcgggaaattgctgtaacacgtgaactcac
taagaaatatgaagagtttatccgaggaaccatatctgaggtcattggatgggcaaacga
ggatcagatacgcggcgagttttgtcttgtcgtagaaggaagtaataatgaagaggtaga
tgaggaagaacaatggtgggaaaccctcactgcgaaagaacatgtcgagcattacatttc
gaaaggcgctacgtctaaagaagctattaaaaaagcagcagtcgatcgcaatgtaccaaa
gcgtgaagtgtacgatgcttaccatattaagcaataaaaaaacgttcttgtgtcataaca
agaacgttttttgtacaagaaatgattatttaaggttttgaagctggttttggatttcgc
tgatgatttgctcagcgccttctttactaagaaccaatttaccgcctgcaagtttaaggt
tatcatcagaaacttcaccagttacttggcaagtcatgtttggtttatattttttaagga
tgattttttcatcatcaacatagatttcaagagcatctttttctgcgattccaagagtac
gacgcagttcgataggaataactacacgtcctaattcatcaactttacgtacaataccag
tagatttcataaacattctcctcccaagagatacttatttgtttaaattatatttttctt
cgtcattattcgacaaaatccttaccttcatagcataacaaggtttccaataatcgtcaa
tcattttgtttactattgattgtaagaattagttcttatagtcagtaatgtcttggaaac
taccgaaataacagcattttataaatatttaataaagctattatcctactaaaaatcctt
ttaaatcaagactttcgaaccaaagttttttatttcatttgattatatacgacaaaattc
gacacgaacagactttttttattttcattaaagatttttaattttaattattctttttca
gggcgtatgtatatattcttgatcttaaaggctaagatggtatcatagataaaggataaa
tataaataatattcatatatgatttgcacttatcgccgctctcgtcctttgggcgggagc
tttttgacattctgattaggaggtttcaagatgccgcaagaaaacaatacattttacatt
acaacaccgatttattatccgagcggaaaattacatatcggccatgcatatacgacagtc
gcaggagatgcaatggcacgttacaaaagattaaaagggttcgatgttcgctatttaacg
ggaacggacgagcatggacaaaagatccagcaaaaagctgaacaggaaaacattacacct
caggagtatgtggatcgcgcagcggcagatattcaaaaactgtggaagcagcttgaaatc
tcaaacgacgactttatccgcacgacagaaaaacggcataaagttgtcattgaaaaagtg
tttcaaaagcttcttgataacggggacatctatcttgatgagtatgaaggctggtacagc
atccctgatgaaacgttctacacggaaactcagctcgttgatattgagcggaatgaaaag
ggagaggtcatcggcggaaaaagccctgacagcggtcacccagttgaattgatcaaagag
gaatcttatttcttccgcatggggaaatacgcggatcgtcttctgaaatactatgaagaa
aacccgacattcattcagccagaatcacgcaaaaacgaaatgattaataactttatcaaa
cctggacttgaggatttggcagtatcacgtaccacttttgattggggcgtgaaggtgccg
gaaaatccaaagcatgttgtatatgtttggattgacgcactatttaactatttaacggca
ctcggttatgatacagaaaatgatgagctttatcaaaaatattggcctgccgatgttcat
ttagtcggtaaggagattgtacgattccatactatttactggccaattatgctgatggcg
ctggatcttccgctgccaaagcaagtattcgcgcatggctggcttttgatgaaagacgga
aaaatgtcgaaatcaaaaggaaacgttgtagatccggttacattaattgaacgctatggt
ttagacgaacttcgctattacttgcttcgcgaagtgccgttcggatcagacggtgttttc
acgccggaaggatttgttgagcgaatcaactatgatttagcgaatgatttaggaaatcta
ttgaatcgtactgttgcgatgattaataagtattttgacggacaaatcggttcttacaaa
ggtgctgttacggaatttgaccatacgctcacttctgttgctgaagaaacagtgaaagct
tatgagaaagcaatggaaaatatggagttctcggtagcactttcgactttatggcagctc
atcagccgcacaaacaaatacattgatgagacagctccatgggtgcttgcgaaagatccg
gcaaaagaagaagaattgcgatcagttatgtatcatctcgctgaatcattgcgtatttca
gcggtactgcttcagccattcttaacaaaaacacctgaaaaaatgttcgagcagctgggc
attactgatgaatctttaaaagcttgggacagcattacagctttcggccagctgaaagat
acaaaagtacaaaaaggcgagccattgttccctcgtttagaggcagaagaagaaattgct
tacatcaaagggaaaatgcaaggttcagcaccagcgaaagaagaaacaaaagaagaagag
cctcaagaggtcgatcgtttacctgaaattacgattgatcaatttatggatgtagagctt
cgcgtagctgaggtcattgaggcagagccagtgaaaaaagcagaccgtttattgaagctg
cagcttgatcttggttttgaaaagcgccaagtggtatccggcattgcgaagcattatacg
cctgaagagcttgttggaaaaaaactcgtttgtgtaacaaatctaaaaccggttaaactc
agaggagagctttctcaaggtatgatccttgcaggagaagcagacggcgttttaaaggtc
gtatctatcgatcagtcgttaccaaaaggcacaagaattaaataatgataaacaaaaggt
gtttcacgtgtaacaattcgtcgaacaccttttgtgtttcgacaagaaaggagtttttca
cttatgttgtttgacactcacgcgcatttaaatgcagaacaatatgatactgatcttgaa
gaggttattgaacgggcaaaagctgaaaaagttgaacgaattgtcgtagttggttttgac
cgtccgacgattacccgtgcgatggaaatgattgaggaatatgattttatttatgcagcc
attggctggcaccctgttgacgctattgacatgacagaggaagacttagcgtggattaaa
gagctttctgctcatgagaaagtggtagcgataggggaaatgggactggattatcattgg
gataaatcacctaaagatattcaaaaagaggtgtttagaaatcaaatcgccttagcgaaa
gaggtcaatttgcctattatcattcataaccgtgatgcaacggaggatgtcgtgaccatt
ttgaaagaggaaggcgcagaagctgtgggcggaatcatgcactgctttacaggaagtgcg
gaagtggcaagagaatgcatgaaaatgaatttttatttatcatttgggggaccggtgaca
tttaaaaatgcgaagaaaccgaaggaagtagtgaaggaaattcccaatgaccggctgctg
attgaaacggactgcccgtttctcacaccgcaccctttccgcgggaaaagaaatgagcca
agctatgtgaaatatgtggcagaacaaatcgccgaattaaaagaaatgacctttgaagag
attgcttccatcacgactgaaaatgcgaaaagacttttccgtataaactgacaaaaaacg
ctagcgggttttgtaagagcttgtcccttacagcgtttttctataaaagttctacatgct
ttcttctcctcataggataggtttgtcgacaagtctttcttccgtttctcagtgtatttc
aggataatgaagaggacactgagcttttgggagaaagagaagggagggttgacagccttt
tagatactctatataatctctccgaggagaaggaggcgtttttcatcacacaaaaaatga
aaaagctgttttccgtaaagcttagcaaaagcaaagtcattctggttgctgcttgtttgc
ttttggcaggaagcgggactgcgtacgcggctcatgagctgacgaaacaatcagtctcag
tttctatcaatggcaaaaagaaacatatacgcacacatgcaaatacagtcggtgatcttt
tggagacgcttgatataaagacaagagacgaagacaagatcacacctgctaaacagacaa
agataacagcagacatggacgttgtgtatgaggctgcaaaacctgtgaagcttacaataa
acggggaagaaaagacgttatggtcaacagcaaaaacggtcggtgcattactggacgaac
aagatgttgatgtgaaagaacaagatcaaattgatcccgcaatagatacagatatttcga
aagacatgaagattaacatagagcccgcatttcaggttactgtgaatgatgcagggaaac
aaaagaagatctggacgacttcgactacggtcgctgactttttaaaacagcaaaagatga
acataaaagacgaagataaaatcaagcctgcgttagatgcaaagctgacgaaaggaaagg
ctgatattacaattactcgtatcgaaaaggtcaccgatgtagttgaagagaagattgcgt
tcgatgtgaaaaagcaagaagacgcttctcttgaaaaagggaaagaaaaggtcgtccaaa
aaggaaaagaaggcaagctaaaaaaacatttcgaagtcgttaaagaaaacggtaaagaag
tgtccagagagcttgtaaaagaagaaacagctgaacaaagcaaagataaagtgattgctg
tcggcacaaagcaaagcagtccaaaatttgaaacggtcagtgcttcaggtgattcaaaaa
cagttgtgtcccgcagcaatgaatcaacaggcaaagtcatgactgtatcatctacggctt
atacggcaagctgcagcggttgttcaggacatacagcgacaggcgtcaatttaaaaaata
atccgaatgccaaagtcatcgctgtggatccaaatgtcattccgctaggctccaaagtcc
acgtggaaggctatggatatgccattgctgcagataccggttcagcgattaaagggaaca
agatagacgtctttttcccagagaaatcatcggcgtaccgatggggaaataaaacagtca
aaattaaaatcttaaattagtatatacttatgtattcagagggttttgcgccctctgttt
ttttcgttataatagacaaagtgcattttctgcttattagacgctcgatataagaaaaag
tttcatgaatatacaaaagtttttattttgtcttggaggaaataatgaaaattaaagaga
tcattgtggtcgaggggcgtgacgatacggcccgcatcaaattggctgttgatgcagaca
caattgaaacaaatggttcagccatcgatgatcatgtgattgaccaaatccgtttggccc
agaagacgagaggcgtcattattttaacggatccggactttccgggagagaagattcgca
aaaccatctcagaggctgtacccggctgtaagcatgcatttttgccaaaacatcttgcca
aacctaaaaacaagcggggaattggtgtggagcatgcatcggttgaaagcattagggcat
gtttagaaaatgtgcatgaggagatggaagcgcagccgagtgacatttcagctgaggatt
tgattcatgccggactaataggcgggcctgcggccaaatgccgccgggaacgactgggtg
atctgttgaaaatcggctatacaaatggcaaacagcttcaaaaacggctgcaaatgtttc
aaattaaaaaaagtgattttatgagtgcgctcgataccgttatgcgggaggaacagaatg
aataaagatattgcgacaccgattagaacgaaagagatactgaagaaatacggtttttct
tttaaaaagagcttaggacagaatttcttaattgatacgaacattttaaacagaattgtt
gatcacgcggaagtgacggagaaaacaggtgtcattgaaatcggcccgggaatcggggct
ttaaccgaacagcttgccaagcgggcgaaaaaggtcgtggcatttgagattgaccagcga