bsubt168_whole.nuc

一个自制的生物信息学程序。 这个程序目的是在基因组文件bsubt168_whole.nuc（部分）中查找设置文件ss.ini所记录的短核苷酸序列CTTAAG（这种短核苷酸一般称寡核苷酸）及其互补

gtcgaaagggaaacagcccagaccgccagctaaggtcccaaagtatacgttaagtggaaa
aggatgtggagttgcttagacaaccaggatgttggcttagaagcagccaccatttaaaga
gtgcgtaatagctcactggtcgagtgactctgcgccgaaaatgtaccggggctaaacgta
tcaccgaagctgcggactgttcttcgaacagtggtaggagagcgttctaagggctgtgaa
gccagaccggaaggactggtggagcgcttagaagtgagaatgccggtatgagtagcgaaa
gaggggtgagaatcccctccaccgaatgcctaaggtttcctgaggaaggctcgtccgctc
agggttagtcgggacctaagccgaggccgaaaggcgtaggcgatggacaacaggttgata
ttcctgtaccacctcctcaccatttgagcaatggggggacgcaggaggatagggtaagcg
cggtattggatatccgcgtccaagcagttaggctgggaaataggcaaatccgtttcccat
aaggctgagctgtgatggcgagcgaaatatagtagcgaagttcctgattccacactgcca
agaaaagcctctagcgaggtgagaggtgcccgtaccgcaaaccgacacaggtaggcgagg
agagaatcctaaggtgatcgagagaactctcgttaaggaactcggcaaaatgaccccgta
acttcgggagaaggggtgctctgttagggtgcaagcccgagagagccgcagtgaataggc
ccaggcgactgtttagcaaaaacacaggtctctgcgaagccgtaaggcgaagtatagggg
ctgacgcctgcccggtgctggaaggttaagaggagcgcttagcgtaagcgaaggtgcgaa
ttgaagccccagtaaacggcggccgtaactataacggtcctaaggtagcgaaattccttg
tcgggtaagttccgacccgcacgaaaggcgcaacgatctgggcactgtctcaacgagaga
ctcggtgaaattatagtacctgtgaagatgcaggttacccgcgacaggacggaaagaccc
cgtggagctttactgcagcctgatattgaatgttggtacagcttgtacaggataggtagg
agccttggaaaccggagcgccagcttcggtggaggcatcggtgggatactaccctggctg
tattgaccttctaacccgccgcccttatcgggcggggagacagtgtcaggtgggcagttt
gactggggcggtcgcctcctaaaaggtaacggaggcgcccaaaggttccctcagaatggt
tggaaatcattcgcagagtgtaaaggcacaagggagcttgactgcgagacctacaagtcg
agcagggacgaaagtcgggcttagtgatccggtggttccgcatggaagggccatcgctca
acggataaaagctaccccggggataacaggcttatctcccccaagagtccacatcgacgg
ggaggtttggcacctcgatgtcggctcatcgcatcctggggctgtagtcggtcccaaggg
ttgggctgttcgcccattaaagcggtacgcgagctgggttcagaacgtcgtgagacagtt
cggtccctatccgtcgcgggcgcaggaaatttgagaggagctgtccttagtacgagagga
ccgggatggacgcaccgctggtgtaccagttgttctgccaagggcatcgctgggtagcta
tgtgcggacgggataagtgctgaaagcatctaagcatgaagcccccctcaagatgagatt
tcccattccgcaaggaagtaagatccctgaaagatgatcaggttgataggtctgaggtgg
aagtgtggcgacacatggagctgacagatactaatcgatcgaggacttaaccatattttt
gaatgatgtcacacctgttatctagttttgagagaacactctcaatttgtttggtggcga
tagcgaagaggtcacacccgttcccataccgaacacggaagttaagctcttcagcgccga
tggtagtcgggggtttccccctgtgagagtaggacgccgccaagcaagcttaaacccagc
tcaatgagctgggttttttgtttgttaaaaatgaagaagaaactgtgaagcgtatttagg
gaatttcttttctgatactaataaaaactgctgaattaacacgtagtcatcacttatatg
ctgtgttaataactcataccaccattctgtttcataccttgcaatcatcccaacgttgta
caaaatcaaataatgaattgtcatttcgggaagcctcagaaattgctccctttgagaagg
gatataatattggttcttttccatgtcaaacaataagctggtcgatgtccatggctcctt
gtcttgtggtgaaatttcgaacagcagcccgtgttcatttttttttgtaaaagaccattg
ataatgatgggacatgtattcagcaaaccttgaatcagacattttgtaattgattactac
ttcctccggtacaaaaatttcgttcttatccttctcaacttttgtcataaatcgttcttt
ctgctgaaagtagaaaatatcgctaagttctggaatggccattaataattttttcatggt
ataccgttcatctactatatccgattgtccgaataaatgtttcataaaatgtacgcatag
gccattccgttgtattttcacttcatcgtcgctaaaacaataattttgtttctttcgttt
tcttgttgttacgccatgtgccagtactgatgtatggcttggataatgaggatcacgtgt
aattaagcatgctttgataagctgtgccattccataaaataaaagaatcggtttgatttc
taagggagaatatgcggcttgtttataaaacgattcggcatgctttaagaaataaataaa
ccgttcactgtttttaaaagagttttttttcgcatcgttaataccgtttaagatataaac
cttttctagaaatttctgggttgattcaacggagtaaaatagcgctaagtctttccactc
atgatatgtcatgtatatttcttaatcctttccgttatctaaatatttcaactctttccc
gcttccttgacatgctcttggctagttgataatctacatataatattttgccgaaaagag
ggggatttactaatgtgggaaagtaaattttcaaaagaaggcttaacgttcgacgatgtg
ctgcttgtaccagcaaagtctgaggtacttccgcgtgatgtggatttatctgtagaactt
acaaaaacgttaaagctaaatattcctgtcatcagcgcaggtatggacactgtaacagaa
tcagcaatggcaattgcaatggcaagacagggcggcttgggcatcattcacaaaaatatg
tccattgaacagcaggctgaacaagttgataaagtaaagcgttctgagcgcggcgttatc
acaaatcccttctttttaactcctgatcaccaagtatttgatgcggagcatttgatgggg
aaatacagaatttccggtgttccgattgtaaataacgaagaagaccagaagcttgttgga
attattacaaaccgtgaccttcgttttatttctgactactcaatgaaaatcagcgacgtc
atgacgaaagaagagctagttactgcatctgtaggaactactctggatgaagctgaaaag
attttgcagaaacataaaattgaaaagcttcctctcgtagatgaccagaataaattaaaa
ggtcttatcacaattaaagacattgaaaaagtcattgagttcccgaactcatctaaagac
attcacggccgcctgatcgttggcgcggcagttggtgtaactggcgatacaatgactcgc
gtcaaaaagcttgttgaagccaatgttgatgtgattgttatcgatacagctcacggacac
tctcaaggcgttttaaacacagtcacaaaaatccgtgaaacgtatcccgaattaaacatt
attgctggaaacgtggcaacagctgaagcgacaagagcgcttatcgaagctggagcagac
gttgtcaaagttggaatagggcctggttcaatttgtactacacgtgttgtagccggcgtg
ggtgttccgcaaattacagcaatttatgattgtgcgactgaagcaagaaaacacggcaaa
acaatcatcgccgacggtgggattaaattctctggcgatatcactaaagcattggcagcc
ggcggacatgctgttatgctcggaagcttgcttgcaggcacatcagaaagccctggtgaa
actgaaatctaccaaggcagaagatttaaggtataccgcggcatgggatcagttgctgca
atggaaaaaggaagtaaagaccgttacttccaagaagaaaacaaaaaatttgttcctgaa
ggaattgaaggacgcacaccttacaaagggccagttgaagaaaccgtttatcagctagtc
ggaggccttcgttctggtatggggtattgcgggtccaaagatctgcgtgcgctaagagaa
gaagctcagttcattcgcatgactggcgcaggacttcgcgaaagccatccgcatgacgta
cagattacaaaagaatcacctaactatacaatttcataataaattgttacaaattaaaaa
catttgacagggtctctgactctgtctattttttttatactgattatgataaaatttata
ctgttgtgcattgaaaatgtccttaacggcttaattatagatgaagaaaatgaaatacgg
aggtcgtacgattgaacatcaagaaatgtaaacagctactgatgtcattggttgtgttaa
ctctagctgtcacgtgtctggctccaatgtcaaaagcgaaagcagccagcgatccaattg
atatcaatgcatctgctgctattatgatcgaagcttcttcaggtaaaattctttacagta
aaaatgcagataagagactgccaattgcgagtatgacaaaaatgatgacagagtatctgt
tattggaagcaattgatcaaggtaaagtgaaatgggaccaaacctatacgcctgatgact
atgtgtatgaaatttcccaagataacagcttatcaaacgttcctcttcggaaagacggga
aatacacagtaaaagaattatatcaagctacagcaatttattctgcaaatgctgctgcta
ttgcgattgcagaaatcgttgccggttctgaaactaagtttgttgaaaaaatgaatgcaa
aagcaaaagaactaggcttaacagattacaaatttgttaacgcaacaggtcttgaaaaca
aagatcttcacgggcatcagcctgaggggacaagcgtaaatgaagaaagtgaagtttctg
caaaggatatggcggttcttgcggatcacttgattactgactaccctgagatactggaga
cttccagtatcgccaaaacgaaattcagagaaggcaccgatgatgaaatggacatgccga
actggaattttatgctgaaggggcttgtcagcgagtataaaaaagcgactgtagacggac
tgaaaacaggttctactgactctgcgggttcatgctttacaggaacagctgaacgcaacg
gtatgcgtgtcatcactgttgttttaaacgcaaagggcaaccttcatacaggccgtttcg
atgaaacgaaaaaaatgtttgattatgctttcgacaatttctccatgaaagaaatttatg
ctgaaggcgatcaagtaaaaggccataaaacaatttcagttgataagggtaaagagaaag
aagtaggcattgtgacaaacaaggcgttctctcttcctgtcaaaaatggtgaagaaaaga
attacaaagcgaaggtcacactgaataaagacaacttaactgctcctgtgaaaaaaggaa
ccaaggttgggaagctgactgcggaatacacaggtgatgaaaaggattacggattcctta
acagcgatctggctggcgtagaccttgttacaaaagaaaatgtagaaaaagcaaactggt
ttgttttgacaatgcgcagtatcggcggattttttgccggaatttggggaagcattgttg
atacggtaaccggctggttttaatcaattgaaagagctctgatggatgttagggctcttt
cgcgtaatatactgaaaaaacccaatttttaataaaaaatgattttcaaagcgctaaaaa
ccgaataaaatagtatatatgcatatgaattattggatttctaggatacaataaggatta
gaaatcatataactataccttgattagggggaccaagaaatggctcaaacaggtactgaa
cgtgtaaaacgcggaatggcagaaatgcaaaaaggcggcgtcatcatggacgtcatcaat
gcggaacaagcgaaaatcgctgaagaagctggagctgtcgctgtaatggcgctagaacgt
gtgccagcagatattcgcgcggctggaggagttgcccgtatggctgaccctacaatcgtg
gaagaagtaatgaatgcagtatctatcccggtaatggcaaaagcgcgtatcggacatatt
gttgaagcgcgtgtgcttgaagctatgggtgttgactatattgatgaaagtgaagttctg
acgccggctgacgaagaatttcatttaaataaaaatgaatacacagttccttttgtctgt
ggctgccgtgatcttggtgaagcaacacgccgtattgcggaaggtgcttctatgcttcgc
acaaaaggtgagcctggaacaggtaatattgttgaggctgttcgccatatgcgtaaagtt
aacgctcaagtgcgcaaagtagttgcgatgagtgaggatgagctaatgacagaagcgaaa
aacctaggtgctccttacgagcttcttcttcaaattaaaaaagacggcaagcttcctgtc
gttaactttgccgctggcggcgtagcaactccagctgatgctgctctcatgatgcagctt
ggtgctgacggagtatttgttggttctggtatttttaaatcagacaaccctgctaaattt
gcgaaagcaattgtggaagcaacaactcactttactgattacaaattaatcgctgagttg
tcaaaagagcttggtactgcaatgaaagggattgaaatctcaaacttacttccagaacag
cgtatgcaagaacgcggctggtaagaacataggagcgctgctgacatgttaacaataggt
gtactaggacttcaaggagcagttagagagcacatccatgcgattgaagcatgcggcgcg
gctggtcttgtcgtaaaacgtccggagcagctgaacgaagttgacgggttgattttgccg
ggcggtgagagcacgacgatgcgccgtttgatcgatacgtatcaattcatggagccgctt
cgtgaattcgctgctcagggcaaaccgatgtttggaacatgtgccggattaattatatta
gcaaaagaaattgccggttcagataatcctcatttaggtcttctgaatgtggttgtagaa
cgtaattcatttggccggcaggttgacagctttgaagctgatttaacaattaaaggcttg
gacgagccttttactggggtattcatccgtgctccgcatattttagaagctggtgaaaat
gttgaagttctatcggagcataatggtcgtattgtagccgcgaaacaggggcaattcctt
ggctgctcattccatccggagctgacagaagatcaccgagtgacgcagctgtttgttgaa
atggttgaggaatataagcaaaaggcacttgtataaaacagttgaaagctgtggaaactt
atagtacattataagcacaaataaagatcgaaaagcgttgataggaactagtagggagcc
tctctttctaagagagccgatggttggtgcgaatcggtgaaagatgctgtctgaatccat
ccttgagcgaaatgctgaagcgagtaggcatttacgggataaccgttatgtttgaaagtg
gaaaacgagtctttgatttgttttcaatcagggtggcaacgcgagagctctcgtcccttt
atggggatgagggctctttttattttcgataaatcaataaaaaaaggagtgtttcgcatg
cttgatacgaaaatgctgagagcaaattttcaagaaattaaagcaaagcttgtacacaaa
ggcgaagacttaactgattttgataagtttgaggcgctggatgatagacgaagagagctt
atcggcaaggttgaagagttaaaaggaaaacgaaatgaagtttctcagcaggttgctgtg
ctgaagcgtgagaaaaaagacgcggatcacattattaaagaaatgcgtgaagtcggcgag
gaaattaaaaagctcgatgaagaattacggacagtggaagctgagcttgatacaatcctg
ctctcaatcccgaatattccgcatgagtctgtacctgtcggtgaaacagaagacgacaac
gtagaagtgcgtaaatggggtgaaaagccttcatttgcttatgagccgaagccgcactgg
gatattgcggatgagctgggtattctggattttgaacgtgctgccaaagtaacaggaagc
cgtttcgtgttctataaaggcttaggtgctcgtctggagcgtgcgctttataactttatg
cttgatctgcatgtggatgagtataactacactgaagtgatcccgccatatatggtaaac
cgcgcaagcatgacgggaacggggcagcttcctaaatttgaagaggatgcatttaaaatc
agagaagaagattatttcttaattccaacggcggaagtgccgattacaaacatgcatcgc
gatgaaatcctttcaggtgacagcctgccgatcaactatgcggcattcagtgcttgcttc
cgttctgaagctggttcagcaggacgtgacacacgcggattaattcgtcagcaccaattt
aataaagttgagcttgtaaagtttgtgaagcctgaagattcttatgaagaattagagaaa
cttacaaaccaagcagaacgggttcttcagctgcttgagcttccataccgtgtcatgagc
atgtgtacgggtgacttaggctttacggctgcgaaaaaatacgatatcgaagtttggatt
ccaagccaagacacatatcgagaaatctcttcttgcagcaacttcgaagcgttccaggcg
agacgtgcgaatattcgtttcagacgtgaagcgaaaggcaagcctgagcatgtacacaca
ctgaacggctcaggactggcggttggaagaacagttgctgctatcttagaaaattatcag
caggaagacggaagcgttgtgattccgaaagtgcttcgtccttatatggggaatagagaa
gtaatgaaaccgtaaattatggaaaggcgtgcctgacaaggtgcgcctttttgcttatgt
aaacacggcattttcataaaaacaaaaaaagtttttaaaaatgcttgaccacacgagaac
atacgtgatatagttagtcttgtcgatacggaggaatacccaagtccggctgaagggatc
ggtcttgaaaaccgacaggggtgtcaaagcccgcgggggttcgaatccctcttcctccgc
catattgattttaattctaatgaaacacaagcatatattggagattgttttgtccgttgc
attcggtgcggcggattttttattttaaagaaaaagtgaatctcgactgagattcacttt
ttttgattatcatgaataactgaagcaatttgatctacaatattttcaatcgagttttcg
tcgttcagaagatcataatcttcaatgcgaagttttaaaacagggcaggcattaaaaccg
cttatccagttctcgtagcgtgtatgcatttcttcccaataagaccggcttgtctgaagc
tccatctcacggccgcgttgttcaatccggtttaaaatgttctccagatctccttctaaa
tagatcaacacatctggatgtgggaaatacggtgtcattaccattgcttcgaaaaggctt
gtgtaagtcttataatcaacctttgacattgtccctttatcagcatgcatttttgcgaaa
attcctgtatcttcataaatcgaacgatcctgtacaaaacctccgccggcttcaaaaatt
gttttctgttctttgaagcgttcagctaagaagtaaatttgaaggtgaaagctccaacgt
tcaaaatcatgatagaacttttccaaatatggattatgatcgacttcctccaacgatgtt
ttaaatccaagccgtttagctaaagtttttgttaaagtcgattttccgacacctactgtt
cctgctactgtaataattgaattcttagggatatgatgttccttcatacgataagctcct
ttacatgggcggcaatgcgttcaaagtcgctcttattcaaaacgaaatcctttgaatcac
catctacggttaacactgtaagttcagggtctgcttcctgcagctgcttgatggcgactt
cataatctgaaatcagctgctccaaatagctagtttcaatttttttctcaaaggggcgcc
cgcgtttttcaatgcggtgtagcaatgtaggcagactggcctttatgtaaatgatgaaat
tcggctttggcagatcatccgttagcaggtgatatatctttttgtatttttccagctgat
gtggagacaaggttcgttccgcaaaaatcacatttttataaatatgataatcagctatta
caggctgtcccttttttaaaaagtgatcactggtgtcttcaagctgtttgtatctgtgac
aaagaaaaaacatctcgagctggaagctccattcctttatattgtcataaaacttatcaa
ggtacgggttatcctctacaatctcattgatcatagggaatccgaatttttgtgagagca
tcgttgcgagagttgtttttcctgccccgataggaccttctattgcaataaaaggggctg
tattcatcggaatcctccttatatctgaaaaacgtgcgtcagttaccgaccttcatattg
tatcacaacccttgggtgcccccatgaaaaaaagacgtttccaaattatcgaaacgtctt
tttgacaacattaaattgatcagacagcagcagccagttttgtggaaaggaaagacccag
cttccaatagctgatgcctcttaaattcagctctttaatcagattgaattttgcttgaat
cgagcgggcatcctcgaaccatacctcgtgccttctgttttctgcatcagtatagcggaa
gaaaggagcttgagcggtttggtcatactgaatggaagcattgttctgatcagctatgac
aatggcttgctgagggcttactgctcttgctggagttccccctgctgtatatggcagcgt
ccagtcatatccatataaattctggcccatgacaattttgttcgcaggcatttcagtcaa
agcatattctatgacatcacggacaggtccaattggagaaaccgcttgaggcggtccgcc
gctatagccccattcatatgtcatgagaacaacaaagtcgacaatttcgccatgtgccct
gtaatcatgagcttcataccacctgccctgctgtgttgcacttgttttaggagcaagagc
cgtagaaatttctaagccctctcgatggaaaagatcccttgcttcgcggaggaattgatt
ataggcctctctatcctggggccgcaaatattcaaagtcgaaatgaatgtcacggaagcc
atatcttctggcattctcgactatttcatttagaagccgtctttttacagtttcgtcgtt
caaaaggatccggccaagttcatcgctgaatgcctggttttctaggttcgttataatcat
catcaatgttgtattttgactttctgtaatgctccttaaattcgttaaaggcggtgcgac
taaggttccgttccgctgtgcctggaagctgaatgcgccaaggtaagttaagtagggcga
cgcttctctggccgcctgctggagattttcgctgacttgatttcctcggggctccaaata
agcatttgattcgatgtctcgtttaggagctggagggatgtataaacggaaaccaatctg
aagcacggtatttaactggatgcggttaacccttgcgagctcggctgctgttgtattgaa
ctgccgggcgatggatgtcagggtatcacctcgcttcacatcatagaactggccagctat
tggaatgacaatggtttgtccgacaacaaggctgtcgggattcggtatttcattcgtttc
agtgatgtcatttgtggttgttctgtattgtgaagcgatagcagaaagagtgtcgccttg
ttttaccacataaatttgaatgaaaaacgcctcctttcatatcgctatcaatgtatgaaa
gaaaagcgctgatcatgtttatttttctataatttgttcttccgtcgtaatttctgcgaa
aagaacattctccatcatggttaaggcgaattcgttatcttcgtcactgtttgacgcgat
acagtccttaggaatcgtgatgctgtattccctcatataagcgtcattagcggtaaacag
cacgcatatattgccggctatacctgttatgataatatgtctcacctgcaactcagtaag