bsubt168_whole.nuc

一个自制的生物信息学程序。 这个程序目的是在基因组文件bsubt168_whole.nuc（部分）中查找设置文件ss.ini所记录的短核苷酸序列CTTAAG（这种短核苷酸一般称寡核苷酸）及其互补

atctttttcggctttttttagtatccacagaggttatcgacaacattttcacattaccaa
cccctgtggacaaggttttttcaacaggttgtccgctttgtggataagattgtgacaacc
attgcaagctctcgtttattttggtattatatttgtgttttaactcttgattactaatcc
tacctttcctctttatccacaaagtgtggataagttgtggattgatttcacacagcttgt
gtagaaggttgtccacaagttgtgaaatttgtcgaaaagctatttatctactatattata
tgttttcaacatttaatgtgtacgaatggtaagcgccatttgctctttttttgtgttcta
taacagagaaagacgccattttctaagaaaaggagggacgtgccggaagatggaaaatat
attagacctgtggaaccaagcccttgctcaaatcgaaaaaaagttgagcaaaccgagttt
tgagacttggatgaagtcaaccaaagcccactcactgcaaggcgatacattaacaatcac
ggctcccaatgaatttgccagagactggctggagtccagatacttgcatctgattgcaga
tactatatatgaattaaccggggaagaattgagcattaagtttgtcattcctcaaaatca
agatgttgaggactttatgccgaaaccgcaagtcaaaaaagcggtcaaagaagatacatc
tgattttcctcaaaatatgctcaatccaaaatatacttttgatacttttgtcatcggatc
tggaaaccgatttgcacatgctgcttccctcgcagtagcggaagcgcccgcgaaagctta
caaccctttatttatctatgggggcgtcggcttagggaaaacacacttaatgcatgcgat
cggccattatgtaatagatcataatccttctgccaaagtggtttatctgtcttctgagaa
atttacaaacgaattcatcaactctatccgagataataaagccgtcgacttccgcaatcg
ctatcgaaatgttgatgtgcttttgatagatgatattcaatttttagcggggaaagaaca
aacccaggaagaatttttccatacatttaacacattacacgaagaaagcaaacaaatcgt
catttcaagtgaccggccgccaaaggaaattccgacacttgaagacagattgcgctcacg
ttttgaatggggacttattacagatatcacaccgcctgatctagaaacgagaattgcaat
tttaagaaaaaaggccaaagcagagggcctcgatattccgaacgaggttatgctttacat
cgcgaatcaaatcgacagcaatattcgggaactcgaaggagcattaatcagagttgtcgc
ttattcatctttaattaataaagatattaatgctgatctggccgctgaggcgttgaaaga
tattattccttcctcaaaaccgaaagtcattacgataaaagaaattcagagggtagtagg
ccagcaatttaatattaaactcgaggatttcaaagcaaaaaaacggacaaagtcagtagc
ttttccgcgtcaaatcgccatgtacttatcaagggaaatgactgattcctctcttcctaa
aatcggtgaagagtttggaggacgtgatcatacgaccgttattcatgcgcatgaaaaaat
ttcaaaactgctggcagatgatgaacagcttcagcagcatgtaaaagaaattaaagaaca
gcttaaatagcaggaccggggatcaatcggggaaagtgtgaataacttttcggaagtcat
acacagtctgtccacatgtggataggctgtgtttcctgtctttttcacaacttatccaca
aatccacaggccctactattacttctactattttttataaatatatatattaatacatta
tccgttaggaggataaaaatgaaattcacgattcaaaaagatcgtcttgttgaaagtgtc
caagatgtattaaaagcagtttcatccagaaccacgattcccattctgactggtattaaa
attgttgcatcagatgatggagtatcctttacagggagtgactcagatatttctattgaa
tccttcattccaaaagaagaaggagataaagaaatcgtcactattgaacagcccggaagc
atcgttttacaggctcgcttttttagtgaaattgtaaaaaaattgccgatggcaactgta
gaaattgaagtccaaaatcagtatttgacgattatccgttctggtaaagctgaatttaat
ctaaacggactggatgctgatgaatatccgcacttgccgcagattgaagagcatcatgcg
attcagatcccaactgatttgttaaaaaatctaatcagacaaacagtatttgcagtgtcc
acctcagaaacacgccctatcttgacaggtgtaaactggaaagtggagcaaagtgaatta
ttatgcactgcaacggatagccaccgtcttgcattaagaaaggcgaaacttgatattcca
gaagacagatcttataacgtcgtgattccgggaaaaagtttaactgaactcagcaagatt
ttagatgacaaccaggaacttgtagatatcgtcatcacagaaacccaagttctgtttaaa
gcgaaaaacgtcttgttcttctcacggcttctggacgggaattatccagacacaaccagc
ctgattccgcaagacagcaaaacagaaatcattgtgaacacaaaagaattccttcaggcc
attgatcgtgcatctcttttagctagagagggacgcaacaacgttgtaaaactgtccgca
aaaccggctgaatccattgaaatttcttccaattcgccagaaatcggtaaagttgtggaa
gcaattgttgcggatcaaattgaaggtgaggaattaaatatctcttttagtccaaaatat
atgctggatgcactaaaggtgcttgaaggagcagaaatacgcgtaagctttacaggcgca
atgagacctttcttaattcgcacgccgaatgatgaaacgattgtacagcttatccttcct
gtcagaacctattaatccgatacactgctgccgacccgtcggcagcttttctattcggta
tctgctccgacaagttttccctttccctaattcgtttttttttagtacaattagatatta
gtgatatttgaaagaggtcgatataatggcaaatccgatttcaattgatacagagatgat
tacactcggacaattcttaaaattagccgatgtgattcagtctggcggtatggcgaagtg
gtttttaagcgagcatgaagtgcttgtgaacgatgagccggacaaccgccggggcagaaa
gctgtatgttggagatgtggtagagattgaaggatttggttcatttcaagtcgtcaatta
aagcgggtgacactgattgtatatccagaacttagaactgacatcttaccgcaactacga
ccatgctgaacttcaatttgaaaataaagtaaatgtgatcatcggagaaaacgcccaggg
gaagacaaacctcatggaggcgatctatgtcttgtccatggcgaaatcgcaccggacatc
aaatgacaaagaacttatacggtgggacaaagactatgctaaaatagagggaagagtgat
gaagcaaaacggggcgatcccgatgcagctcgtcatctccaaaaagggtaaaaagggcaa
ggtcaatcatattgaacagcaaaagctcagccagtatgtcggggccctcaacaccattat
gttcgcgccggaagatttaaatcttgtaaagggaagccctcaagtgagaaggcggtttct
tgacatggaaatcggacaggtttctcccgtctaccttcatgatctttctctttaccagaa
aatcctttcccagcggaatcattttttgaaacagctgcaaacaagaaaacaaactgaccg
gacgatgctcgatgttctgaccgatcagcttgtagaagttgcagcaaaagtcgtcgtaaa
acgcctgcagtttacagcacagctcgagaaatgggcgcagcccatccatgcaggcatctc
aagagggcttgaagaactgaccctgaaataccatacagctcttgatgtatcagatcccct
agatttgtcgaaaataggagatagctatcaagaagcgttttctaaattaagagaaaaaga
aattgagcgtggtgtgacgctgtcagggcctcatcgcgatgatgttcttttctatgtgaa
cggacgcgatgtgcagacgtatggttctcaaggacagcagcgaacgacggcgttgtccct
taagctggcggagattgacctgatccatgaagaaatcggagaatatcccattttactatt
ggatgatgtactgagtgaactggatgattatcgccagtcacacttgcttcatacgatcca
aggccgtgtacaaacgtttgtcacaacgacaagcgttgatggcattgatcacgaaacctt
acgtcaagcaggaatgttccgtgtgcaaaatggtgcgttagtgaagtgaagaaatgaggt
gagcaattgtatattcatttaggtgatgactttgtggtttcaacacgagatattgtcggc
atttttgactttaaagccaacatgtcgcctattgttgaagaatttctgaaaaaacagaaa
cacaaggtggtgccttccgtaaacgcacgcccaaatctatcgtagtcacggttcagaata
tatattactctcccttatcttccagcacattaaaaaaacgtgcgcaatttatgtttgaaa
tagattcttagaaattttttatcacgaatatatcgtttagaaaagtgtaggtgaatgacg
tggctatggaacagcagcaaaacagttatgatgaaaatcagatacaggtactagaaggat
tggaagctgttcgtaaaagaccggggatgtatatcggttcgacaaacagcaaaggccttc
accacttggtatgggaaattgtcgacaatagtattgacgaagccctcgccggttattgta
cggatatcaatatccaaatcgaaaaagacaacagtatcacggttgtagataatggccgcg
gtattccagtcggtattcatgaaaaaatgggccgtcctgcggtagaagtcattatgacgg
tgcttcatgccggaggaaaatttgacggaagcggctataaagtatccggaggattacacg
gtgtaggtgcgtcggtcgtaaacgcactatcaacagagcttgatgtgacggttcaccgtg
acggtaaaattcaccgccaaacctataaacgcggagttccggttacagaccttgaaatca
ttggcgaaacggatcatacaggaacgacgacacattttgtcccggaccctgaaattttct
cagaaacaaccgagtatgattacgatctgcttgccaaccgcgtgcgtgaattagcctttt
taacaaagggcgtaaacatcacgattgaagataaacgtgaaggacaagagcgcaaaaatg
aataccattacgaaggcggaattaaaagttatgtagagtatttaaaccgctctaaagagg
ttgtccatgaagagccgatttacattgaaggcgaaaaggacggcattacggttgaagtgg
ctttgcaatacaatgacagctacacaagcaacatttactcgtttacaaacaacattaaca
cgtacgaaggcggtacccatgaagctggcttcaaaacgggcctgactcgtgttatcaacg
attacgccagaaaaaaagggcttattaaagaaaatgatccaaacctaagcggagatgacg
taagggaagggctgacagcgattatttcaatcaaacaccctgatccgcagtttgagggcc
aaacaaaaacaaagctgggcaactcagaagcacggacgatcaccgatacgttattttcta
cggcgatggaaacatttatgctggaaaatccagatgcagccaaaaaaattgtcgataaag
gtttaatggcggcaagagcaagaatggctgcgaaaaaagcgcgtgaactaacacgccgta
agagtgctttggaaatttcaaacctgcccggtaagttagcggactgctcttcaaaagatc
cgagcatctccgagttatatatcgtagagggtgactctgccggaggatctgctaaacaag
gacgcgacagacatttccaagccattttgccgcttagaggtaaaatcctaaacgttgaaa
aggccagactggataaaatcctttctaacaacgaagttcgctctatgatcacagcgctcg
gcacaggtatcggagaagacttcaaccttgagaaagcccgttaccacaaagttgtcatta
tgacagatgccgatgttgacggcgcgcacatcagaacactgctgttaacgttcttttaca
gatatatgcgccaaattatcgaaaatggctacgtgtacattgcgcagccgccgctctaca
aggttcaacaggggaaacgcgttgaatatgcatacaatgacaaggagcttgaagagctgt
taaaaactcttcctcaaacgcctaagcctggactgcagcgttacaaaggtcttggtgaaa
tgaatgccacccagctatgggagacaaccatggatcctagctccagaacacttcttcagg
taactcttgaagatgcaatggatgcggatgagacttttgaaatgcttatgggcgacaagg
tagaaccgcgccgaaacttcatagaagcgaatgcgagatacgttaaaaatcttgacatct
aatcataaaaagccttatttccaataagaaataaggcttttttctgaacaagatcagatg
cagcgatgcctgcaatacctatatattctagcaatttaatgtgtataatcataagtttat
tgatataatggagaatagtgaaatcgtattgaaggtcataatggacaatctactcccaca
tatttcatgtgatacttcagggaggttttttaatgagtgaacaaaacacaccacaagttc
gtgaaataaatatcagtcaggaaatgcgtacgtccttcttggattatgcaatgagcgtta
tcgtgtcccgtgctcttccggatgttcgtgacggtttaaaaccggttcatagacggattt
tgtatgcaatgaatgatttaggcatgacaagtgacaagccttataaaaaatccgcgcgta
tcgttggagaagttatcgggaaataccacccgcacggtgattcagcggtatatgaatcca
tggtcagaatggctcaggatttcaactaccgttatatgctcgttgacggtcacggaaact
tcggttctgttgacggagactcagcggcggccatgcgttatacagaagcacgaatgtcta
aaatctcaatggagattcttcgcgacatcacaaaagacacaatcgattaccaggataact
atgacgggtcagaaagagaacctgtcgttatgccttcaaggttcccgaatctgctcgtga
acggtgctgccggcattgcggtaggtatggcaacaaacattcctccgcaccagctgggag
aaatcattgacggtgtacttgctgttagtgagaatccggacattacaattccagagctta
tggaagtcattccagggcctgatttcccgaccgcgggtcaaatcttgggacgcagcggta
tccggaaagcatacgaatcaggccgaggctctatcacgatccgggcaaaagctgagatcg
aacaaacatcttcgggtaaagaaagaattatcgttacagagttaccttaccaagtaaata
aggcgaaattaattgagaaaattgctgatctcgtaagggacaaaaagatagagggtatca
cagatctgcgtgatgagtcagatcgtacaggtatgagaattgtcattgaaatcagacgcg
atgccaatgcgaatgttatcttaaacaatctgtacaaacaaactgctctacaaacatctt
ttggcatcaacctgcttgcgcttgttgatggccagccgaaagttttaactcttaagcaat
gcctggagcattaccttgaccatcaaaaagttgtcattagacgccgtactgcttatgaat
tgcgtaaagcagaagcgagagctcatatcttggaaggattgagagttgcactggatcatc
tcgatgcagttatctcccttatccgtaattctcaaacggctgaaattgcgagaacaggtt
taattgaacaattctcactgacagagaagcaagcacaagcgatccttgacatgaggctcc
agcgtttaacgggactggaacgtgaaaagatcgaagaagaataccagtctcttgttaaat
taattgcagagctaaaagacatcttggcaaatgaatataaagtgcttgagatcattcgtg
aagaactcacggaaatcaaagagcgttttaacgatgaaagacgtactgagatcgtcactt
ctggactggagacaattgaagatgaagatctcatcgagagagaaaatatcgtagttactc
tgacgcacaacggatacgtcaaacgtcttcctgcatcaacttaccgcagtcaaaaacggg
gcggaaaaggtgtacaaggtatgggaacaaacgaagatgatttcgttgaacatttgatct
ctacgtcaactcatgacacgattctcttcttctcgaacaaggggaaagtgtatcgtgcaa
aagggtatgaaatccctgaatacggcagaacggcaaaaggaatcccgattattaacctgc
tggaggtagaaaagggtgagtggatcaacgcgattattccagtcacggaattcaatgcgg
agctttacctcttcttcactacaaagcatggggtttcaaaacgaacatcgctatctcaat
tcgctaatatccgcaacaatggtctaattgctctgagtcttcgtgaagatgatgaactga
tgggtgtacgtctgactgacggcacaaaacaaatcatcattggaacgaaaaacggtttac
tgattcgtttccctgaaacagatgtccgagagatgggaagaactgcggcgggcgtaaaag
gcatcaccctgacggatgacgacgttgttgtcggcatggagattttagaggaagaatcac
acgtccttatcgtaactgaaaaagggtacggaaaacgaactcctgctgaagagtacagaa
cccaaagccggggcggaaaaggactcaaaacagcgaaaatcaccgagaacaacggccaac
tagtagcagtgaaagctactaaaggtgaagaggatctaatgattattacagctagcggcg
tactcatcagaatggacatcaatgatatctccatcaccggacgtgtcactcaaggtgtgc
gtctcatcagaatggcagaagaagagcatgttgctacagtagctttagttgagaaaaacg
aagaagatgagaatgaagaagaacaagaagaagtgtgaaaaaaagcgcagctgaaatagc
tgcgcttttttgtgtcataaccctttacagtcataaaaattatggtataatcatttctgt
tgtctttttaaagacacaagcatgaccattatgactagtaaaaactttttcaaaaaagta
ttgacctagttaactaaaaatgttactattaagtagtcgctttgagagaagcacacaagt
tctttgaaaactaaacaagacaaaacgtacctgttaattcatttttataaatcgcacagc
gatgtgcgtagtcagtcaaactagggcctgcacgacgcaggtcacacaggtgtcgccgca
ggatgcggtgaacttaacctgtgatccatttatcggagagtttgatcctggctcaggacg
aacgctggcggcgtgcctaatacatgcaagtcgagcggacagatgggagcttgctccctg
atgttagcggcggacgggtgagtaacacgtgggtaacctgcctgtaagactgggataact
ccgggaaaccggggctaataccggatggttgtttgaaccgcatggttcaaacataaaagg
tggcttcggctaccacttacagatggacccgcggcgcattagctagttggtgaggtaacg
gctcaccaaggcgacgatgcgtagccgacctgagagggtgatcggccacactgggactga
gacacggcccagactcctacgggaggcagcagtagggaatcttccgcaatggacgaaagt
ctgacggagcaacgccgcgtgagtgatgaaggttttcggatcgtaaagctctgttgttag
ggaagaacaagtgccgttcgaatagggcggtaccttgacggtacctaaccagaaagccac
ggctaactacgtgccagcagccgcggtaatacgtaggtggcaagcgttgtccggaattat
tgggcgtaaagggctcgcaggcggtttcttaagtctgatgtgaaagcccccggctcaacc
ggggagggtcattggaaactggggaacttgagtgcagaagaggagagtggaattccacgt
gtagcggtgaaatgcgtagagatgtggaggaacaccagtggcgaaggcgactctctggtc
tgtaactgacgctgaggagcgaaagcgtggggagcgaacaggattagataccctggtagt
ccacgccgtaaacgatgagtgctaagtgttagggggtttccgccccttagtgctgcagct
aacgcattaagcactccgcctggggagtacggtcgcaagactgaaactcaaaggaattga
cgggggcccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgaagaacctta
ccaggtcttgacatcctctgacaatcctagagataggacgtccccttcgggggcagagtg
acaggtggtgcatggttgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaac
gagcgcaacccttgatcttagttgccagcattcagttgggcactctaaggtgactgccgg
tgacaaaccggaggaaggtggggatgacgtcaaatcatcatgccccttatgacctgggct
acacacgtgctacaatggacagaacaaagggcagcgaaaccgcgaggttaagccaatccc
acaaatctgttctcagttcggatcgcagtctgcaactcgactgcgtgaagctggaatcgc
tagtaatcgcggatcagcatgccgcggtgaatacgttcccgggccttgtacacaccgccc
gtcacaccacgagagtttgtaacacccgaagtcggtgaggtaaccttttaggagccagcc
gccgaaggtgggacagatgattggggtgaagtcgtaacaaggtagccgtatcggaaggtg
cggctggatcacctcctttctaaggatattttacggaatataagaccttgggtcttataa
acagaacgttccctgtcttgtttagttttgaaggaactttgttccttgaataagttaaga
tgggcctgtagctcagctggttagagcgcacgcctgataagcgtgaggtcggtggttcga
gtccactcaggcccaccatcttatataacggggccttagctcagctgggagagcgcctgc
tttgcacgcaggaggtcagcggttcgatcccgctaggctccaccaacgtgttctttgaaa
actagataacagtagacatcacattcaattagtaacacaagatatcacatagtgattctt
tttaacggttaagttagaaagggcgcacggtggatgccttggcactaggagccgatgaag
gacgggacgaacaccgatatgcttcggggagctgtaagcaagctttgatccggagatttc
cgaatggggaaacccaccactcgtaatggagtggtatccatatctgaattcataggatat
gagaaggcagacccggggaactgaaacatctaagtacccggaggaagagaaagcaaatgc
gattccctgagtagcggcgagcgaaacgggatcagcccaaaccaagaggcttgcctcttg
gggttgtaggacactctgtacggagttacaaaggaacgaggtagatgaagaggtctggaa
aggcccgccataggaggtaacagccctgtagtcaaaacttcgttctctcctgagtggatc
ctgagtacggcggaacacgtgaaattccgtcggaatccgggaggaccatctcccaaggct
aaatactccctagtgaccgatagtgaaccagtaccgtgagggaaaggtgaaaagcacccc
ggaaggggagtgaaagagatcctgaaaccgtgtgcctacaagtagtcagagcccgttaac
gggtgatggcgtgccttttgtagaatgaaccggcgagttacgatctcgtgcaaggttaag
cagaagatgcggagccgcagcgaaagcgagtctgaatagggcgcatgagtacgtggtcgt
agacccgaaaccaggtgatctacccatgtccagggtgaagttcaggtaacactgaatgga
ggcccgaacccacgcacgttgaaaagtgcggggatgaggtgtgggtaggggtgaaatgcc
aatcgaacctggagatagctggttctctccgaaatagctttagggctagcctcaaggtaa
gagtcttggaggtagagcactgattggactaggggcccctaccgggttaccgaattcagt
caaactccgaatgccaatgacttatccttgggagtcagactgcgagtgataagatccgta