link.bif

数据挖掘方面的源码

//%%%%%%%%%%%%%%%%%%%%%%%  L I N K  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
//% Pedigree for linkage analysis created by Claus S. Jensen and
//% Augustin Kong.
//% 
//% @TechReport{jensen:kong:96,
//%   author = 	 {Claus Skaaning Jensen and Augustine Kong},
//%   title = 	 {Blocking {G}ibbs Sampling for Linkage Analysis in Large
//%                   Pedigrees with Many Loops},
//%   institution =  "Department of Computer Science, Aalborg University,
//%                   Denmark",
//%   year = 	 1996,
//%   type =	 {Research Report},
//%   number =	 {R-96-2048},
//%   address =	 "Fredrik Bajers Vej 7, DK-9220 Aalborg~\O",
//%   month =	 dec
//% }
//% 
network Unknown {
}

variable D0_56_d_p {
  property label = "D0.56.d.p"; 
  type discrete[2] {   a, // "a"
   n// "n"
 };
}

variable N56_d_g {
  property label = "56.d.g"; 
  type discrete[3] {   1_1, // "1.1"
   1_2, // "1.2"
   2_2// "2.2"
 };
}

variable N56_d_m {
  property label = "56.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N56_d_f {
  property label = "56.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable Z_56_d_m {
  property label = "Z.56.d.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N55_d_m {
  property label = "55.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N55_d_f {
  property label = "55.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable Z_56_d_f {
  property label = "Z.56.d.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N54_d_m {
  property label = "54.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N54_d_f {
  property label = "54.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable D0_56_a_m {
  property label = "D0.56.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable Z_56_a_m {
  property label = "Z.56.a.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N55_a_m {
  property label = "55.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable N55_a_f {
  property label = "55.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable D1_56_a_m {
  property label = "D1.56.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable D0_56_a_f {
  property label = "D0.56.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable Z_56_a_f {
  property label = "Z.56.a.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N54_a_m {
  property label = "54.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable N54_a_f {
  property label = "54.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable D1_56_a_f {
  property label = "D1.56.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable D0_57_d_p {
  property label = "D0.57.d.p"; 
  type discrete[2] {   a, // "a"
   n// "n"
 };
}

variable N57_d_g {
  property label = "57.d.g"; 
  type discrete[3] {   1_1, // "1.1"
   1_2, // "1.2"
   2_2// "2.2"
 };
}

variable N57_d_m {
  property label = "57.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N57_d_f {
  property label = "57.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable Z_57_d_m {
  property label = "Z.57.d.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable Z_57_d_f {
  property label = "Z.57.d.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable D0_57_a_x {
  property label = "D0.57.a.x"; 
  type discrete[2] {   x, // "x"
   y// "y"
 };
}

variable N57_a_m {
  property label = "57.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable N57_a_f {
  property label = "57.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable Z_57_a_m {
  property label = "Z.57.a.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable Z_57_a_f {
  property label = "Z.57.a.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable D0_58_d_p {
  property label = "D0.58.d.p"; 
  type discrete[2] {   a, // "a"
   n// "n"
 };
}

variable N58_d_g {
  property label = "58.d.g"; 
  type discrete[3] {   1_1, // "1.1"
   1_2, // "1.2"
   2_2// "2.2"
 };
}

variable N58_d_m {
  property label = "58.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N58_d_f {
  property label = "58.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable Z_58_d_m {
  property label = "Z.58.d.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable Z_58_d_f {
  property label = "Z.58.d.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable D0_58_a_x {
  property label = "D0.58.a.x"; 
  type discrete[2] {   x, // "x"
   y// "y"
 };
}

variable N58_a_m {
  property label = "58.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable N58_a_f {
  property label = "58.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable Z_58_a_m {
  property label = "Z.58.a.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable Z_58_a_f {
  property label = "Z.58.a.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable D0_59_d_p {
  property label = "D0.59.d.p"; 
  type discrete[2] {   a, // "a"
   n// "n"
 };
}

variable N59_d_g {
  property label = "59.d.g"; 
  type discrete[3] {   1_1, // "1.1"
   1_2, // "1.2"
   2_2// "2.2"
 };
}

variable N59_d_m {
  property label = "59.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N59_d_f {
  property label = "59.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable Z_59_d_m {
  property label = "Z.59.d.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable Z_59_d_f {
  property label = "Z.59.d.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable D0_59_a_x {
  property label = "D0.59.a.x"; 
  type discrete[2] {   x, // "x"
   y// "y"
 };
}

variable N59_a_m {
  property label = "59.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable N59_a_f {
  property label = "59.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable Z_59_a_m {
  property label = "Z.59.a.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable Z_59_a_f {
  property label = "Z.59.a.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable D0_54_d_p {
  property label = "D0.54.d.p"; 
  type discrete[2] {   a, // "a"
   n// "n"
 };
}

variable N54_d_g {
  property label = "54.d.g"; 
  type discrete[3] {   1_1, // "1.1"
   1_2, // "1.2"
   2_2// "2.2"
 };
}

variable Z_54_d_m {
  property label = "Z.54.d.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N23_d_m {
  property label = "23.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N23_d_f {
  property label = "23.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable Z_54_d_f {
  property label = "Z.54.d.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N25_d_m {
  property label = "25.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N25_d_f {
  property label = "25.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable D0_54_a_x {
  property label = "D0.54.a.x"; 
  type discrete[2] {   x, // "x"
   y// "y"
 };
}

variable Z_54_a_m {
  property label = "Z.54.a.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N23_a_m {
  property label = "23.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable N23_a_f {
  property label = "23.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable Z_54_a_f {
  property label = "Z.54.a.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N25_a_m {
  property label = "25.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable N25_a_f {
  property label = "25.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable D0_25_d_p {
  property label = "D0.25.d.p"; 
  type discrete[2] {   a, // "a"
   n// "n"
 };
}

variable N25_d_g {
  property label = "25.d.g"; 
  type discrete[3] {   1_1, // "1.1"
   1_2, // "1.2"
   2_2// "2.2"
 };
}

variable Z_25_d_m {
  property label = "Z.25.d.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N73_d_m {
  property label = "73.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N73_d_f {
  property label = "73.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable Z_25_d_f {
  property label = "Z.25.d.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N72_d_m {
  property label = "72.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N72_d_f {
  property label = "72.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable D0_25_a_x {
  property label = "D0.25.a.x"; 
  type discrete[2] {   x, // "x"
   y// "y"
 };
}

variable Z_25_a_m {
  property label = "Z.25.a.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N73_a_m {
  property label = "73.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable N73_a_f {
  property label = "73.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable Z_25_a_f {
  property label = "Z.25.a.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N72_a_m {
  property label = "72.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable N72_a_f {
  property label = "72.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable D0_73_d_p {
  property label = "D0.73.d.p"; 
  type discrete[2] {   a, // "a"
   n// "n"
 };
}

variable N73_d_g {
  property label = "73.d.g"; 
  type discrete[3] {   1_1, // "1.1"
   1_2, // "1.2"
   2_2// "2.2"
 };
}

variable D0_72_d_p {
  property label = "D0.72.d.p"; 
  type discrete[2] {   a, // "a"
   n// "n"
 };
}

variable N72_d_g {
  property label = "72.d.g"; 
  type discrete[3] {   1_1, // "1.1"
   1_2, // "1.2"
   2_2// "2.2"
 };
}

variable Z_72_d_m {
  property label = "Z.72.d.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N3_d_m {
  property label = "3.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N3_d_f {
  property label = "3.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable Z_72_d_f {
  property label = "Z.72.d.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N5_d_m {
  property label = "5.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N5_d_f {
  property label = "5.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable Z_72_a_m {
  property label = "Z.72.a.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N3_a_m {
  property label = "3.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable N3_a_f {
  property label = "3.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable Z_72_a_f {
  property label = "Z.72.a.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N5_a_m {
  property label = "5.a.m"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable N5_a_f {
  property label = "5.a.f"; 
  type discrete[4] {   1, // "1"
   2, // "2"
   3, // "3"
   4// "4"
 };
}

variable D0_55_d_p {
  property label = "D0.55.d.p"; 
  type discrete[2] {   a, // "a"
   n// "n"
 };
}

variable N55_d_g {
  property label = "55.d.g"; 
  type discrete[3] {   1_1, // "1.1"
   1_2, // "1.2"
   2_2// "2.2"
 };
}

variable Z_55_d_m {
  property label = "Z.55.d.m"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N26_d_m {
  property label = "26.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N26_d_f {
  property label = "26.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable Z_55_d_f {
  property label = "Z.55.d.f"; 
  type discrete[2] {   f, // "f"
   m// "m"
 };
}

variable N24_d_m {
  property label = "24.d.m"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable N24_d_f {
  property label = "24.d.f"; 
  type discrete[2] {   1, // "1"
   2// "2"
 };
}

variable D0_55_a_x {
  property label = "D0.55.a.x"; 
  type discrete[2] {   x, // "x"
   y// "y"
 };
}

variable Z_55_a_m {