index-all.html

Java方面的数值算法

<DT><A HREF="./net/sf/javaml/clustering/SOM.SomNode.html#addLabel(java.lang.String)"><B>addLabel(String)</B></A> - 
Method in class net.sf.javaml.clustering.<A HREF="./net/sf/javaml/clustering/SOM.SomNode.html" title="class in net.sf.javaml.clustering">SOM.SomNode</A>
<DD>Set the secondary label(s) for this node.
<DT><A HREF="./net/sf/javaml/clustering/mcl/SparseMatrix.html#adjustMaxIndex(int, int)"><B>adjustMaxIndex(int, int)</B></A> - 
Method in class net.sf.javaml.clustering.mcl.<A HREF="./net/sf/javaml/clustering/mcl/SparseMatrix.html" title="class in net.sf.javaml.clustering.mcl">SparseMatrix</A>
<DD>adjusts the size of the matrix.
<DT><A HREF="./net/sf/javaml/clustering/CAST.html#affinityVector(java.util.Vector, java.util.Vector, net.sf.javaml.core.Dataset, double[][])"><B>affinityVector(Vector&lt;Instance&gt;, Vector&lt;Instance&gt;, Dataset, double[][])</B></A> - 
Method in class net.sf.javaml.clustering.<A HREF="./net/sf/javaml/clustering/CAST.html" title="class in net.sf.javaml.clustering">CAST</A>
<DD>&nbsp;
<DT><A HREF="./net/sf/javaml/clustering/evaluation/AICScore.html" title="class in net.sf.javaml.clustering.evaluation"><B>AICScore</B></A> - Class in <A HREF="./net/sf/javaml/clustering/evaluation/package-summary.html">net.sf.javaml.clustering.evaluation</A><DD>XXX doc<DT><A HREF="./net/sf/javaml/clustering/evaluation/AICScore.html#AICScore()"><B>AICScore()</B></A> - 
Constructor for class net.sf.javaml.clustering.evaluation.<A HREF="./net/sf/javaml/clustering/evaluation/AICScore.html" title="class in net.sf.javaml.clustering.evaluation">AICScore</A>
<DD>&nbsp;
<DT><A HREF="./net/sf/javaml/clustering/Ant.html" title="class in net.sf.javaml.clustering"><B>Ant</B></A> - Class in <A HREF="./net/sf/javaml/clustering/package-summary.html">net.sf.javaml.clustering</A><DD>This class implements an Ant Based Clustering Algorithm based on ideas
 from papers by Handl et al. and Schockaert et al.<DT><A HREF="./net/sf/javaml/clustering/Ant.html#Ant()"><B>Ant()</B></A> - 
Constructor for class net.sf.javaml.clustering.<A HREF="./net/sf/javaml/clustering/Ant.html" title="class in net.sf.javaml.clustering">Ant</A>
<DD>default constructor
<DT><A HREF="./net/sf/javaml/clustering/Ant.html#Ant(net.sf.javaml.distance.DistanceMeasure)"><B>Ant(DistanceMeasure)</B></A> - 
Constructor for class net.sf.javaml.clustering.<A HREF="./net/sf/javaml/clustering/Ant.html" title="class in net.sf.javaml.clustering">Ant</A>
<DD>&nbsp;
<DT><A HREF="./net/sf/javaml/clustering/Ant.html#Ant(int, int, int, net.sf.javaml.distance.DistanceMeasure)"><B>Ant(int, int, int, DistanceMeasure)</B></A> - 
Constructor for class net.sf.javaml.clustering.<A HREF="./net/sf/javaml/clustering/Ant.html" title="class in net.sf.javaml.clustering">Ant</A>
<DD>XXX add docu
<DT><A HREF="./net/sf/javaml/clustering/AQBC.html" title="class in net.sf.javaml.clustering"><B>AQBC</B></A> - Class in <A HREF="./net/sf/javaml/clustering/package-summary.html">net.sf.javaml.clustering</A><DD>This class implements the Adaptive Quality-based Clustering Algorithm, based
 on the implementation in MATLAB by De Smet et al., ESAT - SCD (SISTA),
 K.U.Leuven, Belgium.<DT><A HREF="./net/sf/javaml/clustering/AQBC.html#AQBC(double)"><B>AQBC(double)</B></A> - 
Constructor for class net.sf.javaml.clustering.<A HREF="./net/sf/javaml/clustering/AQBC.html" title="class in net.sf.javaml.clustering">AQBC</A>
<DD>XXX write doc
<DT><A HREF="./net/sf/javaml/clustering/AQBC.html#AQBC()"><B>AQBC()</B></A> - 
Constructor for class net.sf.javaml.clustering.<A HREF="./net/sf/javaml/clustering/AQBC.html" title="class in net.sf.javaml.clustering">AQBC</A>
<DD>XXX write doc
 
 default constructor
<DT><A HREF="./net/sf/javaml/tools/weka/ARFF.html" title="class in net.sf.javaml.tools.weka"><B>ARFF</B></A> - Class in <A HREF="./net/sf/javaml/tools/weka/package-summary.html">net.sf.javaml.tools.weka</A><DD>&nbsp;<DT><A HREF="./net/sf/javaml/tools/weka/ARFF.html#ARFF()"><B>ARFF()</B></A> - 
Constructor for class net.sf.javaml.tools.weka.<A HREF="./net/sf/javaml/tools/weka/ARFF.html" title="class in net.sf.javaml.tools.weka">ARFF</A>
<DD>&nbsp;
<DT><A HREF="./gov/nist/math/jama/Matrix.html#arrayLeftDivide(gov.nist.math.jama.Matrix)"><B>arrayLeftDivide(Matrix)</B></A> - 
Method in class gov.nist.math.jama.<A HREF="./gov/nist/math/jama/Matrix.html" title="class in gov.nist.math.jama">Matrix</A>
<DD>Element-by-element left division, C = A.
<DT><A HREF="./gov/nist/math/jama/Matrix.html#arrayLeftDivideEquals(gov.nist.math.jama.Matrix)"><B>arrayLeftDivideEquals(Matrix)</B></A> - 
Method in class gov.nist.math.jama.<A HREF="./gov/nist/math/jama/Matrix.html" title="class in gov.nist.math.jama">Matrix</A>
<DD>Element-by-element left division in place, A = A.
<DT><A HREF="./net/sf/javaml/utils/ArrayOperations.html" title="class in net.sf.javaml.utils"><B>ArrayOperations</B></A> - Class in <A HREF="./net/sf/javaml/utils/package-summary.html">net.sf.javaml.utils</A><DD>&nbsp;<DT><A HREF="./net/sf/javaml/utils/ArrayOperations.html#ArrayOperations()"><B>ArrayOperations()</B></A> - 
Constructor for class net.sf.javaml.utils.<A HREF="./net/sf/javaml/utils/ArrayOperations.html" title="class in net.sf.javaml.utils">ArrayOperations</A>
<DD>&nbsp;
<DT><A HREF="./gov/nist/math/jama/Matrix.html#arrayRightDivide(gov.nist.math.jama.Matrix)"><B>arrayRightDivide(Matrix)</B></A> - 
Method in class gov.nist.math.jama.<A HREF="./gov/nist/math/jama/Matrix.html" title="class in gov.nist.math.jama">Matrix</A>
<DD>Element-by-element right division, C = A.
<DT><A HREF="./gov/nist/math/jama/Matrix.html#arrayRightDivideEquals(gov.nist.math.jama.Matrix)"><B>arrayRightDivideEquals(Matrix)</B></A> - 
Method in class gov.nist.math.jama.<A HREF="./gov/nist/math/jama/Matrix.html" title="class in gov.nist.math.jama">Matrix</A>
<DD>Element-by-element right division in place, A = A.
<DT><A HREF="./gov/nist/math/jama/Matrix.html#arrayTimes(gov.nist.math.jama.Matrix)"><B>arrayTimes(Matrix)</B></A> - 
Method in class gov.nist.math.jama.<A HREF="./gov/nist/math/jama/Matrix.html" title="class in gov.nist.math.jama">Matrix</A>
<DD>Element-by-element multiplication, C = A.
<DT><A HREF="./gov/nist/math/jama/Matrix.html#arrayTimesEquals(gov.nist.math.jama.Matrix)"><B>arrayTimesEquals(Matrix)</B></A> - 
Method in class gov.nist.math.jama.<A HREF="./gov/nist/math/jama/Matrix.html" title="class in gov.nist.math.jama">Matrix</A>
<DD>Element-by-element multiplication in place, A = A.
<DT><A HREF="./nz/ac/waikato/cs/weka/Utils.html#arrayToString(java.lang.Object)"><B>arrayToString(Object)</B></A> - 
Static method in class nz.ac.waikato.cs.weka.<A HREF="./nz/ac/waikato/cs/weka/Utils.html" title="class in nz.ac.waikato.cs.weka">Utils</A>
<DD>Returns the given Array in a string representation.
</DL>
<HR>
<A NAME="_B_"><!-- --></A><H2>
<B>B</B></H2>
<DL>
<DT><A HREF="./nz/ac/waikato/cs/weka/Utils.html#backQuoteChars(java.lang.String)"><B>backQuoteChars(String)</B></A> - 
Static method in class nz.ac.waikato.cs.weka.<A HREF="./nz/ac/waikato/cs/weka/Utils.html" title="class in nz.ac.waikato.cs.weka">Utils</A>
<DD>Converts carriage returns and new lines in a string into \r and \n.
<DT><A HREF="./net/sf/javaml/clustering/evaluation/BICScore.html" title="class in net.sf.javaml.clustering.evaluation"><B>BICScore</B></A> - Class in <A HREF="./net/sf/javaml/clustering/evaluation/package-summary.html">net.sf.javaml.clustering.evaluation</A><DD>XXX DOC<DT><A HREF="./net/sf/javaml/clustering/evaluation/BICScore.html#BICScore()"><B>BICScore()</B></A> - 
Constructor for class net.sf.javaml.clustering.evaluation.<A HREF="./net/sf/javaml/clustering/evaluation/BICScore.html" title="class in net.sf.javaml.clustering.evaluation">BICScore</A>
<DD>&nbsp;
<DT><A HREF="./net/sf/javaml/classification/svm/BinaryLinearSMO.html" title="class in net.sf.javaml.classification.svm"><B>BinaryLinearSMO</B></A> - Class in <A HREF="./net/sf/javaml/classification/svm/package-summary.html">net.sf.javaml.classification.svm</A><DD>Implements John Platt's sequential minimal
 optimization algorithm for training a support vector classifier.<DT><A HREF="./net/sf/javaml/classification/svm/BinaryLinearSMO.html#BinaryLinearSMO()"><B>BinaryLinearSMO()</B></A> - 
Constructor for class net.sf.javaml.classification.svm.<A HREF="./net/sf/javaml/classification/svm/BinaryLinearSMO.html" title="class in net.sf.javaml.classification.svm">BinaryLinearSMO</A>
<DD>&nbsp;
<DT><A HREF="./net/sf/javaml/classification/svm/BinarySMO.html" title="class in net.sf.javaml.classification.svm"><B>BinarySMO</B></A> - Class in <A HREF="./net/sf/javaml/classification/svm/package-summary.html">net.sf.javaml.classification.svm</A><DD>&nbsp;<DT><A HREF="./net/sf/javaml/classification/svm/BinarySMO.html#BinarySMO()"><B>BinarySMO()</B></A> - 
Constructor for class net.sf.javaml.classification.svm.<A HREF="./net/sf/javaml/classification/svm/BinarySMO.html" title="class in net.sf.javaml.classification.svm">BinarySMO</A>
<DD>&nbsp;
<DT><A HREF="./net/sf/javaml/tools/bioinformatics/BlastResult.html" title="class in net.sf.javaml.tools.bioinformatics"><B>BlastResult</B></A> - Class in <A HREF="./net/sf/javaml/tools/bioinformatics/package-summary.html">net.sf.javaml.tools.bioinformatics</A><DD>&nbsp;<DT><A HREF="./net/sf/javaml/tools/bioinformatics/BlastResult.html#BlastResult(java.io.File)"><B>BlastResult(File)</B></A> - 
Constructor for class net.sf.javaml.tools.bioinformatics.<A HREF="./net/sf/javaml/tools/bioinformatics/BlastResult.html" title="class in net.sf.javaml.tools.bioinformatics">BlastResult</A>
<DD>XXX DOC
<DT><A HREF="./net/sf/javaml/tools/bioinformatics/BlastSimilarity.html" title="class in net.sf.javaml.tools.bioinformatics"><B>BlastSimilarity</B></A> - Class in <A HREF="./net/sf/javaml/tools/bioinformatics/package-summary.html">net.sf.javaml.tools.bioinformatics</A><DD>This class provides a similarity measure based on the distance functions from a BlastResult.<DT><A HREF="./net/sf/javaml/tools/bioinformatics/BlastSimilarity.html#BlastSimilarity(net.sf.javaml.tools.bioinformatics.BlastResult)"><B>BlastSimilarity(BlastResult)</B></A> - 
Constructor for class net.sf.javaml.tools.bioinformatics.<A HREF="./net/sf/javaml/tools/bioinformatics/BlastSimilarity.html" title="class in net.sf.javaml.tools.bioinformatics">BlastSimilarity</A>
<DD>&nbsp;
<DT><A HREF="./net/sf/javaml/clustering/SOM.JSomMath.html#bubbleAdaptation(double[], double[], double[], double[], double, double)"><B>bubbleAdaptation(double[], double[], double[], double[], double, double)</B></A> - 
Method in class net.sf.javaml.clustering.<A HREF="./net/sf/javaml/clustering/SOM.JSomMath.html" title="class in net.sf.javaml.clustering">SOM.JSomMath</A>
<DD>Calculates the new adapted values for a weight vector, based on
 Bubble neighbourhood.
<DT><A HREF="./net/sf/javaml/classification/Classifier.html#buildClassifier(net.sf.javaml.core.Dataset)"><B>buildClassifier(Dataset)</B></A> - 
Method in interface net.sf.javaml.classification.<A HREF="./net/sf/javaml/classification/Classifier.html" title="interface in net.sf.javaml.classification">Classifier</A>
<DD>Create a classifier from the given dataset.
<DT><A HREF="./net/sf/javaml/classification/Logistic.html#buildClassifier(net.sf.javaml.core.Dataset)"><B>buildClassifier(Dataset)</B></A> - 
Method in class net.sf.javaml.classification.<A HREF="./net/sf/javaml/classification/Logistic.html" title="class in net.sf.javaml.classification">Logistic</A>
<DD>Builds the classifier
<DT><A HREF="./net/sf/javaml/classification/svm/BinaryLinearSMO.html#buildClassifier(net.sf.javaml.core.Dataset)"><B>buildClassifier(Dataset)</B></A> - 
Method in class net.sf.javaml.classification.svm.<A HREF="./net/sf/javaml/classification/svm/BinaryLinearSMO.html" title="class in net.sf.javaml.classification.svm">BinaryLinearSMO</A>
<DD>Method for building the binary classifier.
<DT><A HREF="./net/sf/javaml/classification/svm/BinarySMO.html#buildClassifier(net.sf.javaml.core.Dataset)"><B>buildClassifier(Dataset)</B></A> - 
Method in class net.sf.javaml.classification.svm.<A HREF="./net/sf/javaml/classification/svm/BinarySMO.html" title="class in net.sf.javaml.classification.svm">BinarySMO</A>
<DD>Method for building the binary classifier.
</DL>
<HR>
<A NAME="_C_"><!-- --></A><H2>
<B>C</B></H2>
<DL>
<DT><A HREF="./net/sf/javaml/distance/CosineDistance.html#calculateDistance(net.sf.javaml.core.Instance, net.sf.javaml.core.Instance)"><B>calculateDistance(Instance, Instance)</B></A> - 
Method in class net.sf.javaml.distance.<A HREF="./net/sf/javaml/distance/CosineDistance.html" title="class in net.sf.javaml.distance">CosineDistance</A>
<DD>&nbsp;
<DT><A HREF="./net/sf/javaml/distance/CosineSimilarity.html#calculateDistance(net.sf.javaml.core.Instance, net.sf.javaml.core.Instance)"><B>calculateDistance(Instance, Instance)</B></A> - 
Method in class net.sf.javaml.distance.<A HREF="./net/sf/javaml/distance/CosineSimilarity.html" title="class in net.sf.javaml.distance">CosineSimilarity</A>
<DD>&nbsp;
<DT><A HREF="./net/sf/javaml/distance/DistanceMeasure.html#calculateDistance(net.sf.javaml.core.Instance, net.sf.javaml.core.Instance)"><B>calculateDistance(Instance, Instance)</B></A> - 
Method in interface net.sf.javaml.distance.<A HREF="./net/sf/javaml/distance/DistanceMeasure.html" title="interface in net.sf.javaml.distance">DistanceMeasure</A>
<DD>XXX add doc
<DT><A HREF="./net/sf/javaml/distance/DynamicTimeWarpingSimilarity.html#calculateDistance(net.sf.javaml.core.Instance, net.sf.javaml.core.Instance)"><B>calculateDistance(Instance, Instance)</B></A> - 
Method in class net.sf.javaml.distance.<A HREF="./net/sf/javaml/distance/DynamicTimeWarpingSimilarity.html" title="class in net.sf.javaml.distance">DynamicTimeWarpingSimilarity</A>
<DD>XXX DOC
<DT><A HREF="./net/sf/javaml/distance/EuclideanDistance.html#calculateDistance(net.sf.javaml.core.Instance, net.sf.javaml.core.Instance)"><B>calculateDistance(Instance, Instance)</B></A> - 
Method in class net.sf.javaml.distance.<A HREF="./net/sf/javaml/distance/EuclideanDistance.html" title="class in net.sf.javaml.distance">EuclideanDistance</A>
<DD>&nbsp;
<DT><A HREF="./net/sf/javaml/distance/ManhattanDistance.html#calculateDistance(net.sf.javaml.core.Instance, net.sf.javaml.core.Instance)"><B>calculateDistance(Instance, Instance)</B></A> - 
Method in class net.sf.javaml.distance.<A HREF="./net/sf/javaml/distance/ManhattanDistance.html" title="class in net.sf.javaml.distance">ManhattanDistance</A>