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R. Read existing cluster geometry 1. Cluster has been started from atom = 1 Species = Si Position = ( 0.05194, 0.05194, 0.03418) N. Build all first neighbours around atom(s) H. Terminate a range of atoms with hydrogens mH. Move a range of H atoms along bonds 5. Rename a range of atoms: change species --------- operations with multiple lists of atoms ------------ T. Tag atoms (specify multiple lists): currently OFF ---------------------- shift --------------------------------- O. General shift of the cluster (new origin) Cm. Shift the cluster to the centre of mass ------------------------- final options ---------------------- Rt. Rotate the WHOLE cluster about the X,Y,Z axes Mv. Move atom(s) -------------- g e n e r a l s e t t i n g s ---------------- XY. Produce <geom.xyz> file after every change for Xmol Hs. H atoms to be added to <geom.xyz> file: NO Co. Show lattice atomic positions Hd. Distance between an atom and H is: 1.00000000000000 Nd. Spherical belt width when finding nn is: 0.100000001490116 W. Write <geom.xyz> file for the current cluster Cc. Show current atomic positions in Cartesian S. Save geometry Q. Proceed/Quit ----------> Choose an appropriate option:
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