ldh.nex

生物信息学中的遗传数据分析的delphi源码。

#NEXUS

[ Quattro et al.'s lactate dehydrogenase (LDH) data
  Proc. Natl. Acad. Sci. 90:242-246 (1993)	
]

BEGIN TAXA;
	[ the 14 organisms from which LDH sequences where obtained ]
	DIMENSIONS NTAX=14;
	TAXLABELS
		Bacteria
		Barley
		Lamprey
		Telost
		Fundulus
		Shark
		Duck
		Chicken
		Rat
		Mouse
		Rabbit
		Pig
		Cow
		Human
	;
ENDBLOCK;

BEGIN DISTRIBUTION;
	[ The distribution and relationships of the 22 LDH sequences]
	TITLE='lactate dehydrogenase';
	NTAX=22;
	RANGE
		Bacteria	: 1,
		Barley		: 2,
		Fundulus_B	: 5,
		Fundulus_C	: 5,
		Duck_B		: 7,
		Chicken_B	: 8,
		Pig_B		: 12,
		Mouse_B		: 10,
		Human_B		: 14,
		Lamprey_A	: 3,
		Telost_A	: 4,
		Shark_A		: 6,
		Rat_C		: 9,
		Mouse_C		: 10,
		Human_C		: 14,
		Chicken_A	: 8,
		Rabbit_A	: 11,
		Pig_A		: 12,
		Cow_A		: 13,
		Rat_A		: 9,
		Mouse_A		: 10,
		Human_A		: 14;

	TREE T1=(1,(2,(((3,4),((5,6),(7,(8,9)))),((10,11),(12,((15,(13,14)),(16,((17,(18,19)),(22,(20,21))))))))));
ENDBLOCK;

BEGIN TREES;
[!>Heuristic search settings:
>  Trees fitted to block lactate dehydrogenase
>  Absence is treated as missing data
>  Widespread associates mapped
>  Nearest neigbor interchange (NNI) branch swapping performed
>  Total number of rearrangments tried = 480
>  Criterion minimised = number of losses
>  Trees found = 5
>  Minimal value = 9
]
	TRANSLATE
		  1 Bacteria,
		  2 Barley,
		  3 Lamprey,
		  4 Telost,
		  5 Fundulus,
		  6 Shark,
		  7 Duck,
		  8 Chicken,
		  9 Rat,
		 10 Mouse,
		 11 Rabbit,
		 12 Pig,
		 13 Cow,
		 14 Human
	;
	TREE T1=(1,(2,((5,(3,4)),(6,((7,8),((14,(9,10)),(11,(12,13))))))));
	TREE T2=(1,(2,((3,4),((5,6),((7,8),((14,(9,10)),(11,(12,13))))))));
	TREE T3=(1,(2,((3,4),(5,(6,((7,8),((14,(9,10)),(11,(12,13)))))))));
	TREE T4=(1,(2,((3,4),(6,(5,((7,8),((14,(9,10)),(11,(12,13)))))))));
	TREE T5=(1,(2,(5,((3,4),(6,((7,8),((14,(9,10)),(11,(12,13)))))))));
ENDBLOCK;