mbpttest.cc

大型并行量子化学软件；支持密度泛函（DFT）。可以进行各种量子化学计算。支持CHARMM并行计算。非常具有应用价值。

//
// mbpttest.cc
//
// Copyright (C) 1996 Limit Point Systems, Inc.
//
// Author: Ida Nielsen <[e-mail]>
// Maintainer: LPS
//
// This file is part of the SC Toolkit.
//
// The SC Toolkit is free software; you can redistribute it and/or modify
// it under the terms of the GNU Library General Public License as published by
// the Free Software Foundation; either version 2, or (at your option)
// any later version.
//
// The SC Toolkit is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
// GNU Library General Public License for more details.
//
// You should have received a copy of the GNU Library General Public License
// along with the SC Toolkit; see the file COPYING.LIB.  If not, write to
// the Free Software Foundation, 675 Mass Ave, Cambridge, MA 02139, USA.
//
// The U.S. Government is granted a limited license as per AL 91-7.
//

#ifdef HAVE_CONFIG_H
#include <scconfig.h>
#endif

#include <string.h>

#include <sys/stat.h>
#include <unistd.h>
#include <new>

#include <util/keyval/keyval.h>
#include <util/group/message.h>
#include <util/group/pregtime.h>
#include <util/misc/bug.h>
#include <util/misc/formio.h>
#include <util/state/stateio.h>
#include <util/state/state_bin.h>

#include <math/scmat/repl.h>
#include <math/scmat/dist.h>

#include <math/optimize/qnewton.h>
#include <math/optimize/gdiis.h>
#include <math/optimize/efc.h>
#include <math/optimize/update.h>

#include <chemistry/molecule/coor.h>
#include <chemistry/molecule/energy.h>

#include <chemistry/qc/scf/clhf.h>
#include <chemistry/qc/scf/hsoshf.h>

#include <chemistry/qc/mbpt/mbpt.h>

using namespace std;
using namespace sc;

// Force linkages:
#ifndef __PIC__
static ForceLink<CLHF> fl0a;
static ForceLink<HSOSHF> fl0b;

static ForceLink<MBPT2> fl0e;

static ForceLink<RedundMolecularCoor> fl1a;
static ForceLink<CartMolecularCoor> fl1b;
static ForceLink<SymmMolecularCoor> fl1c;

static ForceLink<QNewtonOpt> fl2;
static ForceLink<GDIISOpt> fl3;
static ForceLink<EFCOpt> fl4;
static ForceLink<BFGSUpdate> fl5;

static ForceLink<ReplSCMatrixKit> fl6;
static ForceLink<DistSCMatrixKit> fl7;

# ifdef HAVE_SYSV_IPC
#   include <util/group/messshm.h>
    static ForceLink<ShmMessageGrp> fl8;
# endif
static ForceLink<ProcMessageGrp> fl9;
# ifdef HAVE_NX_H
#  include <util/group/messpgon.h>
    static ForceLink<ParagonMessageGrp> fl10;
# endif
#endif

Ref<RegionTimer> tim;
Ref<MessageGrp> grp;

static Ref<MessageGrp>
init_mp(const Ref<KeyVal>& keyval, int &argc, char **&argv)
{
  grp << keyval->describedclassvalue("message");

  if (grp.null()) grp = MessageGrp::initial_messagegrp(argc, argv);

  if (grp.null()) {
      grp << keyval->describedclassvalue("messagegrp");
    }

  if (grp.null()) grp = MessageGrp::get_default_messagegrp();

  if (grp.null()) {
    std::cerr << indent << "Couldn't initialize MessageGrp\n";
    abort();
    }

  MessageGrp::set_default_messagegrp(grp);

  Ref<Debugger> debugger; debugger << keyval->describedclassvalue(":debug");
  // Let the debugger know the name of the executable and the node
  if (debugger.nonnull()) {
    debugger->set_exec("mbpttest");
    debugger->set_prefix(grp->me());
    debugger->debug("curt is a hog");
  }
  
  tim = new ParallelRegionTimer(grp,"mbpttest",1,0);
  RegionTimer::set_default_regiontimer(tim);

  SCFormIO::set_printnode(0);
  SCFormIO::init_mp(grp->me());
  //SCFormIO::set_debug(1);

  SCFormIO::setindent(ExEnv::outn(), 2);
  SCFormIO::setindent(cerr, 2);
  
  return grp;
}

main(int argc, char**argv)
{
  const char *input =      (argc > 1)? argv[1] : SRCDIR "/mbpttest.in";
  const char *keyword =    (argc > 2)? argv[2] : "mole";
  const char *optkeyword = (argc > 3)? argv[3] : "opt";

  // open keyval input
  Ref<KeyVal> rpkv(new ParsedKeyVal(input));

  init_mp(rpkv, argc, argv);

  tim->enter("input");
  
  int do_gradient = rpkv->booleanvalue("gradient");

  if (rpkv->exists("matrixkit")) {
    Ref<SCMatrixKit> kit; kit << rpkv->describedclassvalue("matrixkit");
    SCMatrixKit::set_default_matrixkit(kit);
    }
  
  struct stat sb;
  Ref<MolecularEnergy> mole;
  Ref<Optimize> opt;

  if (stat("mbpttest.ckpt",&sb)==0 && sb.st_size) {
    StateInBin si("mbpttest.ckpt");
    opt << SavableState::restore_state(si);
    mole << opt->function();
  } else {
    mole << rpkv->describedclassvalue(keyword);
    opt << rpkv->describedclassvalue(optkeyword);
    if (opt.nonnull()) {
      opt->set_checkpoint();
      opt->set_checkpoint_file("mbpttest.ckpt");
    }
  }

  tim->exit("input");

  if (mole.nonnull()) {
    ExEnv::out0() << indent << "energy: " << mole->energy() << endl;
    if (do_gradient && mole->gradient_implemented()) {
      if (opt.nonnull()) {
        opt->optimize();
      } else {
        mole->gradient().print("gradient");
      }
    } else if (mole->value_implemented()) {
      ExEnv::out0() << indent
           << scprintf("value of mole is %20.15f\n\n", mole->energy());
    }

  mole->print(ExEnv::out0());
  }

  StateOutBin so("mbpttest.wfn");
  SavableState::save_state(mole.pointer(),so);
  
  tim->print(ExEnv::out0());

  tim = 0;
  grp = 0;
  RegionTimer::set_default_regiontimer(0);
  MessageGrp::set_default_messagegrp(0);
  return 0;
}

/////////////////////////////////////////////////////////////////////////////

// Local Variables:
// mode: c++
// c-file-style: "CLJ-CONDENSED"
// End: