1b5t_a.1cnv.ali

This the implementation of structural SVM for training complex alignment models for protein sequence

1B5T_A:1CNV:0:2:335:GQINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGAN-------SGERDRT-----------HSIIKGIKDRTG---LEAAPHLT-----CIDA---TPDELRTIAR-DYWNN---------GIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVA-----DFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFF-----FD----VESYLRFRDRCVSAGID--VEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVK-ILSREG------VKDFHFYTLNRAEMSYAICHTLGVR:SSTEIAVYWGQR-------EDGLLRDTCKTNNYKIVFISFLDKFGCEIRKP--ELELEGVCGPSVGNPCSFLESQIKECQRMGVKVFLALGGPKGTYSACSADYAKDLAEYLHTYFLSERREGPLGKVALDGIHFDIQKPV-----DELNWDNLLEELYQIKDVYQSTFLLSAAPGCLS--------PDEYLDNAIQTRHFDYIFVRFYNDRSCQYSTGNIQRIRNAWLSWTKSVYPRDKNLFLELPASQA--TAP-------GGG-----------------------YIPPSALIGQVLPYLPDLQTRYAGIALWNRQADKET-GYSTNIIRY