1nar.2acq.ali

This the implementation of structural SVM for training complex alignment models for protein sequence

1NAR:2ACQ:3:12:339:IFREYIGVKPNSTTLHDFP----TEIINTETLEFHYILGFAIESYYESGKGTGTFEESWDVELFGPEKVKNLK--RRHP--EVKVVISIGGRGVNTPFDPAEENVWVSNAKESLKLIIQKYSDDSGNLIDGIDIHYEHI-------------------RSDEPFATLMGQLITELKKDDDLNINVVSIAPSENNSSHYQKLYNA---KKDYINWVDYQFSNQQKPVSTDDAFVEIFKSLEKDYHPHKVLPGFS--TDPLDT-----KHNKITR------------------DIFIGGCTRLVQTFSLPGVFFWNANDSVIPKRDGDKPFIVELTLQQLL:PILGLGTWKSPPGQVTEAVKVAIDVGY------RHIDCAHV----------------YQNENEVG-VAIQEKLREQVVKREELFIVSKLW------CTYH-----EKGLVKGACQKTLSDLKL---DYLDLYLIHWPTGFKPGKEFFPLDESGNVVPSD---TNILDTWAAMEELVDE--GLVKAIGISN---FNHLQVEMILNKPGLKYKPAVNQIECH---PYLT-------QEKLIQYCQSKGIVVTAYSPLGSPDRPWAKPEDPS--LLEDPRIKAIAAKHNKTTAQVLIRFPMQ-------RNLVVIPKSV--TP------ERIAENFKVFDFE