1b8g_a.2can_a.ali

This the implementation of structural SVM for training complex alignment models for protein sequence

1B8G_A:2CAN_A:20:17:464:WQEYEKNP---------YHEVHNTNGIIQMG-LAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYH---GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA----------DPGEAVLIPTPYYPGFDRDLKW------------RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNP-LGTTMTRNELYLLLSFVEDKGIHLISDEI-YSGTAFSS----PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSG--ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHL--------NISPGSSCHCTEPGWFRVCFAN------LPERTLDLAMQRLKAF:YHPLPVALERGKGIYLWDVEGRKY---FDFLSSYSAVNQGHCHPKIVNALKSQVDK----------LTLTSRAFYNNVLGEYEEYITKLF--------NYH--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALERALQ-----DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP-----------------DIVLLGKA--LSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAAL----EVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKG-LLNAIVIK-----------ETKDWDAWKVCLRLRDNGLLAKPTHG---------DIIRFAPPLVIKEDELRESIEIINKTILSF