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Date: Thu, 21 Nov 1996 19:51:46 GMTServer: NCSA/1.5Content-type: text/htmlLast-modified: Tue, 01 Oct 1996 16:42:13 GMTContent-length: 5803<html><head><title>Gene Myers -- Home Page</title></head><body><h1> Gene Myers' Home Page </h1>Phone: (520) 621-6612<br>FAX: (520) 621-4246<address><!WA0><img align=middle src="http://www.cs.arizona.edu/people/gene/mailbox.gif"><!WA1><a href="mailto:gene@cs.arizona.edu"> gene@cs.arizona.edu<a></address><br><!WA2><a href = "#bio">Short Biography & Picture</a><br><!WA3><a href = "#papers">Papers</a><br><!WA4><a href = "#code">Software</a><br><!WA5><a href = "http://www.cs.arizona.edu/people/gene/vita.html">Vitae</a><hr><a name = "bio"><h1>Gene Myers</h1></a><!WA6><img align=bottom src="http://www.cs.arizona.edu/people/gene/gene2.jpg">Gene Myers is a Professor of Computer Scienceat the University of Arizona. He received his Ph.D in Computer Sciencefrom the University of Colorado in 1981. His research interestsinclude design of algorithms, pattern matching, computer graphics, andcomputational molecular biology.His most recent academic work has focused on algorithms for thecentral combinatorial problems involved in DNA sequencing, andon a wide range of sequence and pattern comparison problems.Among the tools he has developed are <!WA7><a href ="http://www.ncbi.nlm.nih.gov/BLAST/index.html">Blast</a> -- a widely used toolfor protein similarity searches, <!WA8><a href = "#code">Anrep</a>-- a pattern matching languagefor applications in molecular biology, and<!WA9><a href = "#code">MacMolecule</a> -- a molecularvisualization tool for Apple computers. Dr. Myers is an editorfor Computer Application in the Biosciences, the Journal of ComputationalBiology, and<!WA10><a href = "http://www.elsevier.com/locate/genecombis">Gene-COMBIS</a>-- an electronic journal.<hr><a name = "papers"><h1> Recent or Unpublished Papers ... </h1></a><h2> ... on DNA Sequencing and Physical Mapping </h2><ul><li><!WA11><a href="http://www.cs.arizona.edu/people/gene/PAPERS/assembly.old.ps"> Exact and Approximate Algorithmsfor the Sequence Reconstruction Problem</a>, with John Kececioglu,<i>Algorithmica</i> 13, 1-2 (1995),5-51.<li><!WA12><a href="http://www.cs.arizona.edu/people/gene/PAPERS/assembly.new.ps"> Toward Simplifying and AccuratelyFormulating Fragment Assembly</a>, <i>Journal of Computational Biology</i>2, 2 (1995), 275-290.<li><!WA13><a href="http://www.cs.arizona.edu/people/gene/PAPERS/FAK_DOC.ps"> An Interface for a FragmentAssembly Kernel</a>, with M. Jain, E. Anson, and S. Larson, Tech. Rep. TR96-04,Dept. of Computer Science,U. of Arizona, Tucson, AZ (1993).<li><!WA14><a href="http://www.cs.arizona.edu/people/gene/PAPERS/UNIFAK.ps"> A Suite of UNIX Filters For FragmentAssembly</a>, Tech. Rep. TR96-07,Dept. of Computer Science,U. of Arizona, Tucson, AZ (1993).<li><!WA15><a href="http://www.cs.arizona.edu/people/gene/PAPERS/assembly.overview.ps"> ``Advances inSequence Assembly''</a> in <i>Automated DNA Sequencing and AnalysisTechniques</i> (C. Venter, ed.)Academic Press Limited (London, England 1994), 231-238.<li><!WA16><a href="http://www.cs.arizona.edu/people/gene/PAPERS/probescore.ps"> A Note on Scoring Clones Given aProbe Ordering</a>, with M. Jain, <i>Journal of Computational Biology</i>2, 1 (1995), 33-38.</ul><h2> ... on Sequence Comparison and String Matching </h2><ul><li><!WA17><a href="http://www.cs.arizona.edu/people/gene/PAPERS/sublinear.ps"> A Sublinear Algorithm for ApproximateKeywork Matching</a>, <i>Algorithmica</i> 12, 4-5 (1994), 345-374.<li><!WA18><a href="http://www.cs.arizona.edu/people/gene/PAPERS/cfl.diff.ps"> Approximately Matching Context-FreeLanguages</a>, <i>Information Processing Letters</i> 54, 2 (1995), 85-92.<li><!WA19><a href="http://www.cs.arizona.edu/people/gene/PAPERS/inc.align.ps"> Incremental String Comparison</a> with G.M. Landau and J.P. Schmidt, <i>SIAM Journal on Computing</i>,accepted.<li><!WA20><a href="http://www.cs.arizona.edu/people/gene/PAPERS/network.ps"> Approximate Matching of Network Expressionswith Spacers</a>, <i>Journal of Computational Biology</i> 3, 1 (1996), 33-51.In press.<li><!WA21><a href="http://www.cs.arizona.edu/people/gene/PAPERS/reg.concave.ps"> Approximate Matching Regular ExpressionMatching with Concave Gap Costs</a>, with J.R. Knight, <i>Algorithmica</i> 14, 1(1995), 85-121.<li><!WA22><a href="http://www.cs.arizona.edu/people/gene/PAPERS/sparse.dp.ps"> Chaining Multiple-Alignment Fragments inSub-Quadratic Time</a>, with W. Miller, <i>Proc. 6th Symp. on DiscreteAlgorithms</i> (San Francisco, 1995), 38-47.<li><!WA23><a href="http://www.cs.arizona.edu/people/gene/PAPERS/twins.ps"> An Algorithm for Locating Non-OverlappingRegions of Maximum Alignment Score</a>, with S. Kannan, <i>SIAM Journal onComputing</i> 25, 3 (1996), 648-662.<li><!WA24><a href="http://www.cs.arizona.edu/people/gene/PAPERS/swap.ps"> Going Against the Grain</a>, with M. Jain,<i>Proceedings of the 3rd South American Workshop on String Processing</i>(Recife, Brazil 1996), to appear.<li><!WA25><a href="http://www.cs.arizona.edu/people/gene/PAPERS/multiconst.ps"> Progressive Multiple Alignment withConstraints</a>, with S. Selznick, Z. Zhang, and W. Miller,<i>Journal of Computational Biology</i>, submitted.<li><!WA26><a href="http://www.cs.arizona.edu/people/gene/PAPERS/suffix.ps"> Suffix Arrays: A New Method for On-LineString Searches</a>, with U. Manber, <i>SIAM Journal on Computing</i>22, 5 (1993), 935-948.<li><!WA27><a href="http://www.cs.arizona.edu/people/gene/PAPERS/compbio.survey.ps"> Sequence Comparison Algorithms inMolecular Biology</a>, Tech. Rep. TR91-29,Dept. of Computer Science,U. of Arizona, Tucson, AZ (1991).</ul><hr><a name = "code"><h1> Software ... </h1><ul><li>Press on <!WA28><a href = "http://www.cs.arizona.edu/people/gene/CODE/anrep.tar.Z">Anrep</a> to get a compressedtar file of our Anrep Pattern Matching System that permits one to specifyProtein and DNA sequence patterns and to search for them. Consult therelated article: ``A System for Pattern Matching Applications on Biosequences,'' withG. Mehldau,<i>Computer Applications in the BioSciences</i> 9, 3 (1993), 299-314.<li>Press on<!WA29><a href = "http://www.blc.arizona.edu/linus/linus.html">Macmolecule</a> togo to the MacMolecule home page where you can get a self extracting, hex-encodedarchive of one of several versions of an alpha release of MacMolecule Lite,a 3D molecular visualization program for Apple computers. This home page alsocontains references to other auxiliary programs and a library of sampleimage files.</ul><h2> Sample MacMolecule Views </h2><h3><!WA30><img align=middle src="http://www.cs.arizona.edu/people/gene/ball.cropped"> Ball and Stick</h3><h3><!WA31><img align=middle src="http://www.cs.arizona.edu/people/gene/space.cropped"> Space Filling</h3><h3><!WA32><img align=middle src="http://www.cs.arizona.edu/people/gene/wire.cropped"> Wire Frame</h3></body></html>⌨️ 快捷键说明
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