parameters2vector.m

％The Metabolic Networks Toolbox contains functions to create, ％modify, display, and simulate bioche

function [vector,names,relevant] = parameters2vector(kinetics,S_ext,S_ext_names)

% [vector,names,relevant] = parameters2vector(kinetics,S_ext,S_ext_names)

switch kinetics.type,
  case 'numeric',        [vector,names] = numeric_par2vector(kinetics.parameters);
  case 'mass-action',    [vector,names] = mass_action2vector(kinetics);
  case 'saturated',      [vector,names] = sat_kinetics2vector(kinetics);
  case 'formula_strings', vector        = kinetics.parameter_values; names = kinetics.parameters;
  otherwise error('Error: unknown kinetics type');
end

if exist('S_ext','var'),
  vector = [vector; S_ext];
  names  = [names; S_ext_names];
end

relevant = (1:length(vector))';