contents.m

％The Metabolic Networks Toolbox contains functions to create, ％modify, display, and simulate bioche

%Graphical display and manipulation of metabolic networks
%
%Functions
% netgraph_make_graph   add graphics parameters to network
% netgraph_clear        reset graphics parameters
% netgraph_draw         show network
% netgraph_regulation   show network with regulation
% netgraph_movie        show timecourses as movie
% netgraph_move         change network shape
% netgraph_external     show and set external metabolites
% netgraph_reversible   show and set reversible reactions
% netgraph_remove       remove metabolites and reactions
%
%a network structure with a m x m stoichiometric matrix contains a field 'graphics_par' 
%which may contain the following fields to determine the appearance of the graphical output
% 
%          metstyle: 'box'
%       metcolstyle: 'values'
%            metcol: color ('c')
%     metprintnames: boolean
%    metprintvalues: boolean
%          metnames: {mx1 cell}
%          actstyle: 'none'
%       actcolstyle: 'values'
%            actcol: color ('r')
%     actprintnames: boolean
%    actprintvalues: boolean
%          actnames: {nx1 cell}
%        arrowstyle: 'none'
%        squaresize: float (1.)
%         arrowsize: float (0.5000)
%            lambda: float (1.)
%         metvalues: [mx1 double]
%     metvalues_std: [mx1 double]
%      metvaluesmax: float
%         actvalues: [nx1 double]
%     actvalues_std: [nx1 double]
%      actvaluesmax: float
%       arrowvalues: [nx1 double]
%                 m: [(m+n)x(m+n) double]
%                db: [(m+n)x(m+n) double]
%                 x: [2x(m+n) double]