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%Metabolic Networks Toolbox%June 2005%%The Metabolic Networks Toolbox contains functions to create,%modify, display, and simulate biochemical reaction networks. %The networks are represented by a data structure described in%'network_structure'.%%Run 'demo_small_network' to get a first impression.%%FUNCTIONS%%Build and query network structure:%----------------------------------%% network_construct network constructor% network_find_metabolites find indices of metabolites% network_find_reactions find indices of reactions% network_check validate dimensions of network fields% network_choose choose subnetwork% network_print_formulae print reaction formulae%%Graphics functions: see 'netgraph'%-------------------%%Choice of parameters:%---------------------% simulate_sat_kinetics choose random parameters for saturated kinetics% simulate_epsilon choose random elasticities%%Simulations:%------------% network_velocities compute metabolic fluxes% network_integrate simulate network dynamics% network_steady_state compute the steady state%%Metabolic control analysis see 'control theory'%--------------------------%%FURTHER HELP TOPICS% network_structure data structure for metabolic networks% netgraph data structure for network graphs% kinetics_structure the different ways to define reaction kinetics% control_theory functions for metabolic control theory
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