retina_confocal.cix

Digital Notebook for Linux 64bit v1.1.0

<?xml version="1.0"?>
<xdma>
  <config type="retina_confocal" 
          version="2" 
          description="Configuration for retina confocal images." />
  
        <widget>
		<label>Species</label>
                <description>The type of species uder experiment</description>		
		<type formelement="combobox">
			<type_conf>
				<item>cat</item>
				<item>human</item>
				<item>mouse</item>
			</type_conf>
		</type>
		<value>cat</value>
		<tag_name>Species</tag_name>
	</widget>

	<widget>
		<label>Animal ID</label>
        <description>
           Unique ID of animal or subject
         </description>
		<type formelement="lineedit" />
		<value></value>
		<tag_name>SubjectID</tag_name>
	</widget>

	<widget>
		<label>Experimental Condition</label>
		<type formelement="combobox">
			<type_conf>
				<item>none</item>
				<item>1day</item>
				<item>28days</item>
				<item>3days </item>
				<item>3days+28days(r)</item>
				<item>7days </item>
				<item>normal </item>
				<item>7days(1+6days_O2)</item>
				<item>normal_under_O2</item>
				<item>3months</item>
				<item>1hour</item>
				<item>3months</item>
				<item>3days+oxygen</item>
				<item>24days</item>
				<item>30days</item>
			</type_conf>
		</type>
		<value>1day</value>
		<tag_name>Condition</tag_name>
	</widget>


	<widget>
	  <tag_name>ImageDate</tag_name>
          <description>Date the image was taken</description>
	  <label>Imaging date</label>
	  <type formelement="dateedit" />
	  <value autofill="date_time"></value>
	</widget>

	<widget>
	  <label>Image Source ID</label>
          <description>
          Original Media ID if it exists i.e. CD number
          </description>
          <type formelement="spinbox">
            <type_conf>
              <minvalue>0</minvalue> 
            </type_conf>
          </type>	  
          <value>0</value>
	  <tag_name>ImageSource</tag_name>
	</widget>

	<widget>
	  <label>Image ID</label>
          <description>
          Unique ID for image (related to Source ID).
          </description>	
          <type formelement="spinbox">
            <type_conf>
              <minvalue>0</minvalue> 
            </type_conf>
          </type>
	  <value>0</value>
	  <tag_name>ImageId</tag_name>
	</widget>

 	<widget>
		<label>File Name</label>
		<type formelement="lineedit">
			<type_conf>
				<maxlength>2000</maxlength>
			</type_conf>
		</type>
		<value></value>
		<tag_name>FileName</tag_name>
	</widget>
	<widget>
		<label>View</label>
		<type formelement="combobox">
			<type_conf>
				<item>whole mount</item>
				<item>cross section</item>
			</type_conf>
		</type>
		<value>cross section</value>
		<tag_name>View</tag_name>
	</widget>
	
	<widget>
		<label>Location</label>
        <description>
           Quadrant for retinal image
        </description>
		<type formelement="lineedit" />
		<value></value>
		<tag_name>Location</tag_name>
	</widget>

	<widget>
	  <label>Magnification</label>
          <description>Magnification in natural units</description>
          
          <type formelement="doublespinbox">
            <type_conf>
              <minvalue>0.0</minvalue>            
              <singlestep>0.0001</singlestep>   
              <decimals>8</decimals>                             
            </type_conf>
          </type>	  
	  <value autofill="pixel_resolution_x">0.0</value>
	  <tag_name>magnification</tag_name>
	</widget>
	
	<widget>
		<label>Antibody Channel 1 (red)</label>
		<type formelement="combobox">
			<type_conf>
				<item>CD44</item>
				<item>Glial Fibrillary Acid Protein</item>
				<item>none</item>
				<item>vimentin</item>
				<item>rod_opsin</item>
				<item>isolectinB4</item>
				<item>calretinin</item>
				<item>neurofilament</item>
				<item>calbindin</item>
				<item>growth associated protein 43</item>
				<item>peanut agglutinin</item>
				<item>alpha36H</item>
				<item>carbonic anhydrase II</item>
				<item>cellular retinaldehyde binding protein</item>
				<item>Glutamine Synthetase</item>
				<item>ML cone opsin</item>
				<item>cytochrome oxidase</item>
				<item>synaptophysin</item>
				<item>S cone opsin</item>
				<item>TUNEL</item>
				<item>vesicle associated membrane protein</item>
				<item>alpha-Protein Kinase C</item>
				<item>glutamin synthetase</item>
			</type_conf>
		</type>
		<value>none</value>
		<tag_name>Antibody1</tag_name>
	</widget>

	<widget>
		<label>Cell Type Antibody Channel 1 (red)</label>
		<type formelement="combobox">
			<type_conf>
				<item>muller</item>
				<item>none</item>
				<item>astrocyte</item>
				<item>microglia</item>
				<item>rod</item>
				<item>horizontal</item>
				<item>ganglion</item>
				<item>amacrine</item>
				<item>Extracellular Matrix</item>
				<item>M/L cone</item>
				<item>S cone</item>
				<item>photoreceptor inner segment</item>
				<item>synaptic vesicle, synaptic terminal</item>
				<item>synaptic vesicle</item>
				<item>photoreceptors</item>
				<item>apoptotic cell</item>
			</type_conf>
		</type>
		<value>none</value>
		<tag_name>CellType1</tag_name>
	</widget>

	<widget>
		<label>Antibody Channel 2 (green)</label>
		<type formelement="combobox">
			<type_conf>
				<item>CD44</item>
				<item>Glial Fibrillary Acid Protein</item>
				<item>none</item>
				<item>vimentin</item>
				<item>rod_opsin</item>
				<item>isolectinB4</item>
				<item>calretinin</item>
				<item>neurofilament</item>
				<item>calbindin</item>
				<item>growth associated protein 43</item>
				<item>peanut agglutinin</item>
				<item>alpha36H</item>
				<item>carbonic anhydrase II</item>
				<item>cellular retinaldehyde binding protein</item>
				<item>Glutamine Synthetase</item>
				<item>ML cone opsin</item>
				<item>cytochrome oxidase</item>
				<item>synaptophysin</item>
				<item>S cone opsin</item>
				<item>TUNEL</item>
				<item>vesicle associated membrane protein</item>
				<item>alpha-Protein Kinase C</item>
				<item>glutamin synthetase</item>
			</type_conf>
		</type>
		<value>none</value>
		<tag_name>Antibody2</tag_name>
	</widget>

	<widget>
		<label>Cell Type Antibody Channel 2 (green)</label>
		<type formelement="combobox">
			<type_conf>
				<item>muller</item>
				<item>none</item>
				<item>astrocyte</item>
				<item>microglia</item>
				<item>rod</item>
				<item>horizontal</item>
				<item>ganglion</item>
				<item>amacrine</item>
				<item>Extracellular Matrix</item>
				<item>M/L cone</item>
				<item>S cone</item>
				<item>photoreceptor inner segment</item>
				<item>synaptic vesicle, synaptic terminal</item>
				<item>synaptic vesicle</item>
				<item>photoreceptors</item>
				<item>apoptotic cell</item>
			</type_conf>
		</type>
		<value>none</value>
		<tag_name>CellType2</tag_name>
	</widget>

	<widget>
		<label>Antibody Channel 3 (blue)</label>
		<type formelement="combobox">
			<type_conf>
				<item>CD44</item>
				<item>Glial Fibrillary Acid Protein</item>
				<item>none</item>
				<item>vimentin</item>
				<item>rod_opsin</item>
				<item>isolectinB4</item>
				<item>calretinin</item>
				<item>neurofilament</item>
				<item>calbindin</item>
				<item>growth associated protein 43</item>
				<item>peanut agglutinin</item>
				<item>alpha36H</item>
				<item>carbonic anhydrase II</item>
				<item>cellular retinaldehyde binding protein</item>
				<item>Glutamine Synthetase</item>
				<item>ML cone opsin</item>
				<item>cytochrome oxidase</item>
				<item>synaptophysin</item>
				<item>S cone opsin</item>
				<item>TUNEL</item>
				<item>vesicle associated membrane protein</item>
				<item>alpha-Protein Kinase C</item>
				<item>glutamin synthetase</item>
			</type_conf>
		</type>
		<value>none</value>
		<tag_name>Antibody3</tag_name>
	</widget>

	<widget>
		<label>Cell Type Antibody Channel 3 (blue)</label>
		<type formelement="combobox">
			<type_conf>
				<item>muller</item>
				<item>none</item>
				<item>astrocyte</item>
				<item>microglia</item>
				<item>rod</item>
				<item>horizontal</item>
				<item>ganglion</item>
				<item>amacrine</item>
				<item>Extracellular Matrix</item>
				<item>M/L cone</item>
				<item>S cone</item>
				<item>photoreceptor inner segment</item>
				<item>synaptic vesicle, synaptic terminal</item>
				<item>synaptic vesicle</item>
				<item>photoreceptors</item>
				<item>apoptotic cell</item>
			</type_conf>
		</type>
		<value>none</value>
		<tag_name>CellType3</tag_name>
	</widget>

	<widget>
          <tag_name>Notes</tag_name>
	  <label>Notes</label>
	  <type formelement="textedit" />
	  <value></value>
	</widget>
	
	<widget>
          <tag_name>FileMetadata</tag_name>
	  <label>Internal file metadata</label>
	  <type formelement="textedit" />
	  <value autofill="heap"></value>
	</widget>	
</xdma>