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<html><head><title>TISEAN: List of changes (Wuppertal)</title></head><body bgcolor="#ffffff"><center><h3>Nonlinear Time Series Routines<br> (FORTRAN branch)</h3><h3>List of changes</h3></center><a name="tisean2.1"></a><h4>TISEAN_2.1 -> TISEAN_3.0.0</h4><ul><li>Due to a bug in a subroutine the only result of <ahref="xc2.html">xc2</a> was a segmentation fault. This bug wasremoved. </li><li>A program performing a cross recurrence plot <ahref="xrecurr.html">xrecurr</a> was added.</li></ul><a name="tisean2.0"></a><h4>TISEAN_2.0 -> TISEAN_2.1</h4><ul><li>The input routines for time series had to be changed. A safety feature made them too slow on many platforms. In the new version, the user has to ensure that the file has enough columns for the task planned since otherwise, missing data is read from the following line(s).<li>An internal change worth mentioning is the calling sequence for <font color=blue><tt>neigh</tt></font>. The array containing the time series has to be given twice. The reason is that this allows two different arrays to be specified. Distances across series are necessary for <a href="xc2.html">xc2</a>.<li><a name="c1"> The program <a href="../docs_f/c1.html"</a>c1</a> now accepts mutivariate time series and can perform mixed embeddings. Also, embedding dimension 1 is now allowed. As a further important change, the center points are now selected randomly ratehr than taken to be the first points in the set. The comparison is however still performed with points starting from the beginning of the series. <li><a name="project"><a name="predict"><a name="lazy"><a name="xc2"> In <a href="../docs_f/project.html"</a>project</a>, <a href="../docs_f/preict.html"</a>predict</a><a href="../docs_f/lazy.html"</a>lazy</a>, and <a href="../docs_f/xc2.html"</a>xc2</a>, the restriction that the embedding dimension must be at least 2 has been removed. <li><a name="wiener"> The Wiener filter <a href="../docs_f/wiener.html"</a>wiener1/2</a> has been improved by offering a smoothed spectral estimator rather than raw periodograms. </ul><a name="tisean1.2"></a><h4>TISEAN_1.2 -> TISEAN_2.0</h4><ul><li><a name="events"><a name="intervals"> Utilities for the conversion of inter-event intervals to event times and vice versa have been added. They are called <a href="events.html">events</a> and <a href="intervals.html">intervals</a>. <li><a name="noise"></a> <font color=blue>noise</font> is no longer supported. If you are desperate, you can find it still in the <font color=blue><tt>unsupported</tt></font> directory.<li><a name="autocor3"></a> <font color=blue>autocor3</font> is no longer supported. If you are desperate, you can find it still in the <font color=blue><tt>unsupported</tt></font> directory. I never used it myself and it was in C. It had to go.<li><a name="lyapunov"></a> <font color=blue>lyapunov</font> is no longer supported due to its redundancy with <a href="../docs_c/lyap_k.html">lyap_k</a>. If you are desperate, you can find it still in the <font color=blue><tt>unsupported</tt></font> directory.<li><a name="surrogates"></a> <a href="surrogates.html"</a>surrogates</a> has been rewritten in FORTRAN with a slight change in its functionality.<li><a name="timrev"></a> <a href="timerev.html"</a>timerev</a> has been rewritten in FORTRAN, same functionality.<li><a name="addnoise"></a> <a href="addnoise.html"</a>addnoise</a> can now run without input files, just as a random number generator.<li><a name="randomize"></a> There are three new members in the <a href="randomize.html"</a>randomize</a> family, one for unevenly sampled data and two suitable for inter-spike interval series.<li>An interference between option names has been removed. In the <a href="randomize.html">randomize</a> family, <font color=blue><tt>-w</tt></font> has been changed to <font color=blue><tt>-u</tt></font>. <li><a name="c1"><a name="c2naive"> <a name="c2d"><a name="c2g"><a name="c2t"> The output of the correlation sum programs has been partially restructured. Seperate files for different embedding dimensions are no longer written, everything come in a single file, seperated by double blank lines. Thus, <a href="c1.html"</a>c1</a>, <a href="c2.html"</a>c2</a>, and <a href="c2naive.html"</a>c2naive</a> are now compatible with <a href="../docs_c/d2.html"</a>d2</a>. These changes also affect <a href="c2d.html"</a>c2d</a>, <a href="c2g.html"</a>c2g</a>, and <a href="c2t.html"</a>c2t</a>, which thereby also become usable for <a href="../docs_c/d2.html"</a>d2</a>. Writing to stdout is now the default and stdin is acceptable as input file.<li><a name="stp">The output of <a href="stp.html"</a>stp</a> can now be better controlled, specifying the spacing of level lines and the number of time steps. <li><a name="xc2"><a name="compare"> The output of the correlation sum programs has been partially restructured. This applies to <a href="../docs_c/xc2.html"</a>xc2</a> as well. Also, rather than reading from two files, now two columns from the same file are read. The latter also applies to <a href="compare.html"</a>compare</a>.<li>The program <font color=blue><tt>randomize_generic_exp_random</tt></font> was quite useless and has therefore been removed.<li><a name="c1">As a personal service to Remo Badii, a "feature" of <a href="../docs_f/c1.html"</a>c1</a> was removed that caused small values of k to be computed more than once, a result of having k discrete but in a logarithmic loop.<li><a name="randomize">The module structure is changed slightly to enable the future incorporation of multivariate data. Please check the new <a href="randomize_extend.html">extension guide</a>. <li>A new program is available to <a href="cluster.html">cluster</a> a dissimilarity matrix.</ul><a name="tisean1.0"></a><h4>TISEAN_1.0 -> TISEAN_1.2</h4><ul><li><a name="c2t"></a><a name="c2g"></a> An oddity with the command line parsing of <a href="c2t.html">c2t</a> and <a href="c2g.html">c2g</a> has been fixed.<li><a name="ar-run"></a> A back end to <a href="../docs_c/ar-model.html">ar-model</a> has been added that runs an autoregressive model. It is called <a href="ar-run.html">ar-run</a>. </ul><a name="tisean0.9"></a><h4>TISEAN_0.9 -> TISEAN_1.0</h4><ul><li>A few of the FORTRAN programs confused one compiler due to the order of declarations, which has now been changed to be conservative.<li>Depending on the number of data points, the necessary zero padding in <a href="wiener.html">wiener1</a> was awkward, if not outright wrong. This has been fixed now.</ul><a name="tisean0.5"></a><h4>TISEAN_0.5 -> TISEAN_0.9</h4><ul><li>Changed the output file behaviour in accordance with what the Dresden programs do: By default, most programs write to stdout now, independent of the input source. The option <font color=blue><tt>-o</tt></font> tells the program to build file names from the input file name, or "stdin" if appropriate. Finally, <font color=blue><tt>-o </tt> <em>outfile</em></font> specifies an <a href=../general.html#outfile>output file name</a> explicitly. Somewhat awkwardly, this will be the same for all input files processed and results are <font color=red>overwritten</font> if you don't move the files fast enough. This behaviour may be changed in later releases once I have a good idea what else to do.<li>Quite a number of options have changed in the course of the re-unification process. Most propminently, <font color=blue><tt>-r</tt></font>/<font color=blue><tt>-R</tt></font> replaces <font color=blue><tt>-e</tt></font>/<font color=blue><tt>-E</tt></font> for absolute lengths scales.<li>Gradually, more and more programs respond meaningfully to the <font color=blue><tt>-V</tt></font> (verbosity) option. </ul><a name="tisean0.4"></a><h4>TISEAN_0.4 -> TISEAN_0.5</h4><ul><li>Recovered correct version of <a href="c2.html">c2</a> which was (slightly) broken in release 0.4.<li>The realisation of <a href="randomize.html">randomize</a> that implements the autocorrelation function suffered from a last-minute change that didn't quite work out and was unusable. Now fixed.<li>All programs interpret anything which is not a valid option or its value as a file name. This allows to give file names at arbitrary places on the command line, a tiny step towards re-unification of the Dresden and Wuppertal branches.<li>All programs, when called without a file name, act as if a "-" was given, and read from stdin if that is appropriate. As a side effect, a few programs have to be called with <font color=blue><tt>-h</tt></font> in order to see the command line options, since a call with no arguments would be a valid execution.</ul><a name="tisean0.3"></a><h4>TISEAN_0.3 -> TISEAN_0.4</h4><ul><li>Almost all (FORTRAN) programs now accept an option <font color=blue><tt> -V# </tt></font> that specifies the level of diagnostic output. The default is as a rule what was there in TISEAN_0.3. Specifying <font color=blue><tt> -V0 </tt></font> now switches off all but fatal error messages. No more reporting of file opening etc.<li>Introduced utilities for usage message, removing repetitions of the same code sequences through all sources. <li>Unstable periodic orbits and their stabilities (<a href="upo.html">upo</a>). Stabilities are still somewhat experimental. <li>Embedding of periodic orbits (<a href="upoembed.html">upoembed</a>). <li>General constrained randomization (<a href="randomize.html">randomize</a>). Contains modules for constraints involving linear correlations, others are planned. Own programming efforts to specify exotic constraints are encouraged.</ul><a name="tisean0.2"></a><h4>TISEAN_0.2 -> TISEAN_0.3</h4><ul><li><a href="timerev.html">timerev</a> and <a href="autocor3.html">autocor3</a>: bug that prevented from reading input removed.<li>Made parsing of commandline arguments more stable (hopefully): larger numbers (up to 20 digits) are handled.</ul><a name="tisean0.1"></a><h4>TISEAN_0.1 -> TISEAN_0.2</h4><ul><li><a href="pc.html">pc</a> prints out the fractions of the variance covered by the principal directions. <li>Recovered correct versions of <a href="lazy.html">lazy</a> and <a href="project.html">project</a>: the difference in the second columns are now formed corerctly, with respect to the raw data, not to the last iterate.</ul></body></html>⌨️ 快捷键说明
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