filter.java

一个数据挖掘软件ALPHAMINERR的整个过程的JAVA版源代码

      if (classIndex.length() != 0) {
	if (classIndex.equals("first")) {
	  data.setClassIndex(0);
	} else if (classIndex.equals("last")) {
	  data.setClassIndex(data.numAttributes() - 1);
	} else {
	  data.setClassIndex(Integer.parseInt(classIndex) - 1);
	}
      }
    } catch (Exception ex) {
      String filterOptions = "";
      // Output the error and also the valid options
      if (filter instanceof OptionHandler) {
	filterOptions += "\nFilter options:\n\n";
	Enumeration em = ((OptionHandler)filter).listOptions();
	while (em.hasMoreElements()) {
	  Option option = (Option) em.nextElement();
	  filterOptions += option.synopsis() + '\n'
	    + option.description() + "\n";
	}
      }

      String genericOptions = "\nGeneral options:\n\n"
	+ "-h\n"
	+ "\tGet help on available options.\n"
	+ "\t(use -b -h for help on batch mode.)\n"
	+ "-i <file>\n"
	+ "\tThe name of the file containing input instances.\n"
	+ "\tIf not supplied then instances will be read from stdin.\n"
	+ "-o <file>\n"
	+ "\tThe name of the file output instances will be written to.\n"
	+ "\tIf not supplied then instances will be written to stdout.\n"
	+ "-c <class index>\n"
	+ "\tThe number of the attribute to use as the class.\n"
	+ "\t\"first\" and \"last\" are also valid entries.\n"
	+ "\tIf not supplied then no class is assigned.\n";

      throw new Exception('\n' + ex.getMessage()
			  + filterOptions+genericOptions);
    }
    
    if (debug) {
      System.err.println("Setting input format");
    }
    boolean printedHeader = false;
    if (filter.setInputFormat(data)) {
      if (debug) {
	System.err.println("Getting output format");
      }
      output.println(filter.getOutputFormat().toString());
      printedHeader = true;
    }
    
    // Pass all the instances to the filter
    while (data.readInstance(input)) {
      if (debug) {
	System.err.println("Input instance to filter");
      }
      if (filter.input(data.instance(0))) {
	if (debug) {
	  System.err.println("Filter said collect immediately");
	}
	if (!printedHeader) {
	  throw new Error("Filter didn't return true from setInputFormat() "
			  + "earlier!");
	}
	if (debug) {
	  System.err.println("Getting output instance");
	}
	output.println(filter.output().toString());
      }
      data.delete(0);
    }
    
    // Say that input has finished, and print any pending output instances
    if (debug) {
      System.err.println("Setting end of batch");
    }
    if (filter.batchFinished()) {
      if (debug) {
	System.err.println("Filter said collect output");
      }
      if (!printedHeader) {
	if (debug) {
	  System.err.println("Getting output format");
	}
	output.println(filter.getOutputFormat().toString());
      }
      if (debug) {
	System.err.println("Getting output instance");
      }
      while (filter.numPendingOutput() > 0) {
	output.println(filter.output().toString());
	if (debug){
	  System.err.println("Getting output instance");
	}
      }
    }
    if (debug) {
      System.err.println("Done");
    }
    
    if (output != null) {
      output.close();
    }
  }

  /**
   * Method for testing filters ability to process multiple batches.
   *
   * @param argv should contain the following arguments:<br>
   * -i (first) input file <br>
   * -o (first) output file <br>
   * -r (second) input file <br>
   * -s (second) output file <br>
   * -c class_index <br>
   * or -h for help on options
   * @exception Exception if something goes wrong or the user requests help on
   * command options
   */
  public static void batchFilterFile(Filter filter, String [] options) 
    throws Exception {

    Instances firstData = null;
    Instances secondData = null;
    Reader firstInput = null;
    Reader secondInput = null;
    PrintWriter firstOutput = null;
    PrintWriter secondOutput = null;
    boolean helpRequest;
    try {
      helpRequest = Utils.getFlag('h', options);

      String fileName = Utils.getOption('i', options); 
      if (fileName.length() != 0) {
	firstInput = new BufferedReader(new FileReader(fileName));
      } else {
	throw new Exception("No first input file given.\n");
      }

      fileName = Utils.getOption('r', options); 
      if (fileName.length() != 0) {
	secondInput = new BufferedReader(new FileReader(fileName));
      } else {
	throw new Exception("No second input file given.\n");
      }

      fileName = Utils.getOption('o', options); 
      if (fileName.length() != 0) {
	firstOutput = new PrintWriter(new FileOutputStream(fileName));
      } else {
	firstOutput = new PrintWriter(System.out);
      }
      
      fileName = Utils.getOption('s', options); 
      if (fileName.length() != 0) {
	secondOutput = new PrintWriter(new FileOutputStream(fileName));
      } else {
	secondOutput = new PrintWriter(System.out);
      }
      String classIndex = Utils.getOption('c', options);

      if (filter instanceof OptionHandler) {
	((OptionHandler)filter).setOptions(options);
      }
      Utils.checkForRemainingOptions(options);
      
      if (helpRequest) {
	throw new Exception("Help requested.\n");
      }
      firstData = new Instances(firstInput, 1);
      secondData = new Instances(secondInput, 1);
      if (!secondData.equalHeaders(firstData)) {
	throw new Exception("Input file formats differ.\n");
      }
      if (classIndex.length() != 0) {
	if (classIndex.equals("first")) {
	  firstData.setClassIndex(0);
	  secondData.setClassIndex(0);
	} else if (classIndex.equals("last")) {
	  firstData.setClassIndex(firstData.numAttributes() - 1);
	  secondData.setClassIndex(secondData.numAttributes() - 1);
	} else {
	  firstData.setClassIndex(Integer.parseInt(classIndex) - 1);
	  secondData.setClassIndex(Integer.parseInt(classIndex) - 1);
	}
      }
    } catch (Exception ex) {
      String filterOptions = "";
      // Output the error and also the valid options
      if (filter instanceof OptionHandler) {
	filterOptions += "\nFilter options:\n\n";
	Enumeration em = ((OptionHandler)filter).listOptions();
	while (em.hasMoreElements()) {
	  Option option = (Option) em.nextElement();
	  filterOptions += option.synopsis() + '\n'
	    + option.description() + "\n";
	}
      }

      String genericOptions = "\nGeneral options:\n\n"
	+ "-h\n"
	+ "\tGet help on available options.\n"
	+ "-i <filename>\n"
	+ "\tThe file containing first input instances.\n"
	+ "-o <filename>\n"
	+ "\tThe file first output instances will be written to.\n"
	+ "-r <filename>\n"
	+ "\tThe file containing second input instances.\n"
	+ "-s <filename>\n"
	+ "\tThe file second output instances will be written to.\n"
	+ "-c <class index>\n"
	+ "\tThe number of the attribute to use as the class.\n"
	+ "\t\"first\" and \"last\" are also valid entries.\n"
	+ "\tIf not supplied then no class is assigned.\n";

      throw new Exception('\n' + ex.getMessage()
			  + filterOptions+genericOptions);
    }
    boolean printedHeader = false;
    if (filter.setInputFormat(firstData)) {
      firstOutput.println(filter.getOutputFormat().toString());
      printedHeader = true;
    }
    
    // Pass all the instances to the filter
    while (firstData.readInstance(firstInput)) {
      if (filter.input(firstData.instance(0))) {
	if (!printedHeader) {
	  throw new Error("Filter didn't return true from setInputFormat() "
			  + "earlier!");
	}
	firstOutput.println(filter.output().toString());
      }
      firstData.delete(0);
    }
    
    // Say that input has finished, and print any pending output instances
    if (filter.batchFinished()) {
      if (!printedHeader) {
	firstOutput.println(filter.getOutputFormat().toString());
      }
      while (filter.numPendingOutput() > 0) {
	firstOutput.println(filter.output().toString());
      }
    }
    
    if (firstOutput != null) {
      firstOutput.close();
    }    
    printedHeader = false;
    if (filter.isOutputFormatDefined()) {
      secondOutput.println(filter.getOutputFormat().toString());
      printedHeader = true;
    }
    // Pass all the second instances to the filter
    while (secondData.readInstance(secondInput)) {
      if (filter.input(secondData.instance(0))) {
	if (!printedHeader) {
	  throw new Error("Filter didn't return true from"
			  + " isOutputFormatDefined() earlier!");
	}
	secondOutput.println(filter.output().toString());
      }
      secondData.delete(0);
    }
    
    // Say that input has finished, and print any pending output instances
    if (filter.batchFinished()) {
      if (!printedHeader) {
	secondOutput.println(filter.getOutputFormat().toString());
      }
      while (filter.numPendingOutput() > 0) {
	secondOutput.println(filter.output().toString());
      }
    }
    if (secondOutput != null) {
      secondOutput.close();
    }
  }

  /**
   * Main method for testing this class.
   *
   * @param argv should contain arguments to the filter: use -h for help
   */
  public static void main(String [] args) {
    
    try {
      if (args.length == 0) {
        throw new Exception("First argument must be the class name of a Filter");
      }
      String fname = args[0];
      Filter f = (Filter)Class.forName(fname).newInstance();
      args[0] = "";
      if (Utils.getFlag('b', args)) {
	Filter.batchFilterFile(f, args);
      } else {
	Filter.filterFile(f, args);
      }
    } catch (Exception ex) {
      ex.printStackTrace();
      System.out.println(ex.getMessage());
    }
  }
}