out3e

These files contain a port, to Python of the inexact string matching functionality of agrep.

Input line ID   AXD005     standard; DNA; PRO; 1462 BP.
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Input line XX
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Input line AC   D88005;
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Input line XX
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Input line SV   D88005.1
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Input line XX
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Input line NI   d1070555
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Input line XX
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Input line DT   02-NOV-1996 (Rel. 49, Created)
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Input line DT   04-JUN-1999 (Rel. 59, Last updated, Version 2)
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Input line XX
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Input line DE   Alcaligenes xylosoxidans DNA for 16S ribosomal RNA.
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Input line XX
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Input line KW   16S ribosomal RNA.
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Input line XX
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Input line OS   Achromobacter xylosoxidans subsp. xylosoxidans
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Input line OC   Bacteria; Proteobacteria; beta subdivision; Alcaligenaceae;
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Input line OC   Achromobacter; Achromobacter xylosoxidans.
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Input line XX
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Input line RN   [1]
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Input line RP   1-1462
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Input line RA   Kunitho T.;
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Input line RT   ;
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Input line RL   Submitted (25-SEP-1996) to the EMBL/GenBank/DDBJ databases.
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Input line RL   Takashi Kunitho, University of Tokyo, Graduate school of Agriculture and
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Input line RL   Agricultural life science; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113, Japan
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Input line RL   (E-mail:[e-mail], Tel:[phone],
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Input line RL   Fax:[phone])
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Input line XX
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Input line RN   [2]
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Input line RP   1-1462
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Input line RA   Anzai Y., Koseki Y., Kunito T., Kim H., Shibata S., Kawasaki H.,
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Input line RA   Oyaizu H.;
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Input line RT   "Taxonomic study of metalotorelant strains of genus Ralstonia: Proposal
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Input line RT   for three new species, Ralstonia metalotorelans sp. nov., Ralstonia
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Input line RT   silverii sp. nov., and Ralstonia tsushimaensis sp. nov.";
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Input line RL   Unpublished.
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Input line XX
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Input line FH   Key             Location/Qualifiers
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Input line FH
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Input line FT   source          1..1462
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Input line FT                   /db_xref="taxon:515"
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Input line FT                   /sequenced_mol="DNA"
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Input line FT                   /organism="Achromobacter xylosoxidans subsp. xylosoxidans"
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Input line FT                   /strain="IAM12684"
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Input line FT                   /sub_species="xylosoxidans"
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Input line FT   rRNA            1..1462
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Input line FT                   /product="16S ribosomal RNA"
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Input line XX
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Input line SQ   Sequence 1462 BP; 372 A; 344 C; 460 G; 285 T; 1 other;
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Input line >AXD005
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Input line acgctagcgggatgccttacacatgcaagtcgaacggcagcacggacttcggtctggtggcgagtggcgaacgggtgagtaatgtatcggaacgtgcccagtagcgggggataactacgcgaaagcgtagctaataccgcatacgccctacgggggaaagcaggggatcgcaagaccttgcactattggagcggccgatatcggattagctagttggtggggtaacggctcaccaaggcgacgatccgtagctggtttgagaggacgaccagccacactgggactgagacacggcccagactcctacgggaggcagcagtggggaattttggacaatgggggaaaccctgatccagccatcccgcgtgttcgatgaaggccttcgggttgtaaagcacttttngcaggaaagaacgtcgcgggttaatacctcgcgaacttacggtaccttgcagaataagcaccggctaactacgtgccagcagccgcggtaatacgtagggtgcaagcgttaatcggaattactgggcgtaaagcgtgcgcaggcggttcggaaagaaagatgtgaaatcccagagcttaactttggaactgcatttttaactaccgggctagagtgtgtcagagggaggtggaattccgcgtgtagcagtgaaatgcgtagatatgcggaggaacaccgatggcgaaggcagcctcctgggataacactgacgctcatgcacgaaagcgtggggagcaaacaggattagataccctggtagtccacgccctaaacgatgtcaactagctgttggggccttcgggccttggtagcgcacgtaacgcgtgaagttgaccgcctggggagtacggtcgcaagattaaaactcaaaggaattgacggggacccgcacaagcggtggatgatgtggattaattcgatgcaacgcgaaaaaccttacctacccttgacatgtctggaatgccgaagagatttggcagtgctcgcaagagaaccggaacacaggtgctgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgtcattagttgctacgaaagggcactctaatgagactgccggtgacaaaccggaggaaggtggggatgacgtcaagtcctcatggcccttatgggtagggcttcacacgtcatacaatggtcgggacagagggtcgccaacccgcgagggggagccaatcccagaaacccgatcgtagtccggatcgcagtctgcaactcgactgcgtgaagtcggaatcgctagtaatcgcggatcagcatgtcgcggtgaatacgttcccgggtcttgtacacaccgcccgtcacaaccatgggagtgggtttaccagaagtagttagcctaaccgcaaggggggcgattaccacggtaggattcatgactggggtgaagtcgtaacaaggt
[(10, 31)]