xxxy2

These files contain a port, to Python of the inexact string matching functionality of agrep.

ID   ECRRDB01   standard; RNA; PRO; 1504 BP.
XX
AC   M25588; M24891; M24892; M24893;
XX
SV   M25588.1
XX
NI   g174378
XX
DT   23-NOV-1989 (Rel. 21, Created)
DT   05-APR-1996 (Rel. 47, Last updated, Version 7)
XX
DE   E.coli 16S rRNA.
XX
KW   16S ribosomal RNA.
XX
OS   Escherichia coli
OC   Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae;
OC   Escherichia.
XX
RN   [1]
RP   1-1504
RX   MEDLINE; 75139062.
RA   Ehresmann C., Stiegler P., Mackie G.A., Zimmermann R.A., Ebel J.P.,
RA   Fellner P.;
RT   "Primary sequence of the 16S ribosomal RNA of Escherichia coli";
RL   Nucleic Acids Res. 2:265-278(1975).
XX
RN   [2]
RX   MEDLINE; 77031699.
RA   Engelberg H., Schoulaker R.;
RT   "Sequence homologies between ribosomal and phage RNAs: a proposed
RT   molecular basis for RNA phage parasitism";
RL   J. Mol. Biol. 106:709-730(1976).
XX
CC   NCBI gi: 174378
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1504
FT                   /db_xref="taxon:562"
FT                   /organism="Escherichia coli"
FT   unsure          93..94
FT                   /note="tt could be c"
FT   unsure          113
FT                   /note="t could be g"
FT   unsure          181
FT                   /note="t could be c"
FT   modified_base   530
FT                   /mod_base=m7g
FT   unsure          792
FT                   /note="g could be deleted"
FT   unsure          911
FT                   /note="m2g could be g"
FT   modified_base   911
FT                   /mod_base=m2g
FT   modified_base   1059
FT                   /mod_base=m5c
FT   unsure          1245
FT                   /note="t could be g"
FT   modified_base   1366
FT                   /note="m4c"
FT                   /mod_base=OTHER
FT   unsure          1371
FT                   /note="t could be c"
FT   modified_base   1372
FT                   /mod_base=m5c
FT   unsure          1372
FT                   /note="m5c could be c"
FT   modified_base   1480
FT                   /note="m26a"
FT                   /mod_base=OTHER
FT   modified_base   1481
FT                   /note="m26a"
FT                   /mod_base=OTHER
XX
SQ   Sequence 1504 BP; 367 A; 354 C; 471 G; 312 T; 0 other;
>ECRRDB01
aaattgagagtttgatcatggctcagattgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacagcagaagggcttgctgcttttgacgctggacggcgagtgtgtaatgtctgggaaactgcctggggggagatgataacacttggaaacggtagctaatacgtgcataatgtcgcaagaccgaaagagggggaccttcgggcctcttgccatcggatgcccagatgggattaggggtagctagtaacgagtggctcacctaggcgacgattccagctggtctgagagggatgaccagcaccactggaactgagacacggtccagactcctacgggggcagcagtggggaatattgcacaatgggcgcaagcctgatgcagccatgtgccgtatgaaggaagccttcgggttgtgaagggagtaaagtctaatactttgctcattgttacccgacgcagcgaagaagccacgtactttcagcgagagaagggggggtggctaactccgtgccagcagccgcggtaatacgaggttaatcgcaagcgtgggcggaattactgtaaagcacgagcgcctggtttgttaagtcagatgtgaaatccccgggcctaaccctgggaactgcatctgatactggcaagcttgtaggtctcggagaggtagaattccagtagagatctggggaataccggtggcggaagcccccctggcggactgacgaaagctcaggtgtgcgggggcatactccgccggtagtccacgtaaacgatgtcgtggggtgacttgccccttgaggcgtggccttcgaggcgctaacgttaagtcgcctgacccgggggggtacgccgcaaggttaaaactcaaatcgaattgggggcccggagcacaagacgcatgatgtgcgtttaattcgcaacgaagaaccttacctggtcttgaccatcacggaagtgttttcagagatgagaatgtgcttccgggaaccgagacagctgcatggctgtcaggtcgtgttgtgttgcgaaatgggtcccgttaagttgcctgcaacgagcaacccttatcctttgttgccagcgggaactcaaagagagactgccagccgtccgtggattaaacgagggggggaagtggggatgacgtcaagtcatcatggcccccttcacgaccagggcacacactgtgctacaatggcgcatcacaaagagagcgactcccgcgagagcaagcggatctcataaagtcgtgcgtagtctgaggtccggattgctaaccgactccatgaagtcggaatcgctagtgtaatcggatccagaatgcaccggtgaatacgttcccgggccttgtacacacgccccgtcacaccatggggtggaggtgactgtgggttgatattcgtccaaaagaagtaggtagcttaaccttcgggagggcttaccactttgtcgtaacaaggtaaccgtaggggaacctgcggttggatcacctcctta