out2

These files contain a port, to Python of the inexact string matching functionality of agrep.

Input line ID   ECRRDB01   standard; RNA; PRO; 1504 BP.
None
Input line XX
None
Input line AC   M25588; M24891; M24892; M24893;
None
Input line XX
None
Input line SV   M25588.1
None
Input line XX
None
Input line NI   g174378
None
Input line XX
None
Input line DT   23-NOV-1989 (Rel. 21, Created)
None
Input line DT   05-APR-1996 (Rel. 47, Last updated, Version 7)
None
Input line XX
None
Input line DE   E.coli 16S rRNA.
None
Input line XX
None
Input line KW   16S ribosomal RNA.
None
Input line XX
None
Input line OS   Escherichia coli
None
Input line OC   Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae;
None
Input line OC   Escherichia.
None
Input line XX
None
Input line RN   [1]
None
Input line RP   1-1504
None
Input line RX   MEDLINE; 75139062.
None
Input line RA   Ehresmann C., Stiegler P., Mackie G.A., Zimmermann R.A., Ebel J.P.,
None
Input line RA   Fellner P.;
None
Input line RT   "Primary sequence of the 16S ribosomal RNA of Escherichia coli";
None
Input line RL   Nucleic Acids Res. 2:265-278(1975).
None
Input line XX
None
Input line RN   [2]
None
Input line RX   MEDLINE; 77031699.
None
Input line RA   Engelberg H., Schoulaker R.;
None
Input line RT   "Sequence homologies between ribosomal and phage RNAs: a proposed
None
Input line RT   molecular basis for RNA phage parasitism";
None
Input line RL   J. Mol. Biol. 106:709-730(1976).
None
Input line XX
None
Input line CC   NCBI gi: 174378
None
Input line XX
None
Input line FH   Key             Location/Qualifiers
None
Input line FH
None
Input line FT   source          1..1504
None
Input line FT                   /db_xref="taxon:562"
None
Input line FT                   /organism="Escherichia coli"
None
Input line FT   unsure          93..94
None
Input line FT                   /note="tt could be c"
None
Input line FT   unsure          113
None
Input line FT                   /note="t could be g"
None
Input line FT   unsure          181
None
Input line FT                   /note="t could be c"
None
Input line FT   modified_base   530
None
Input line FT                   /mod_base=m7g
None
Input line FT   unsure          792
None
Input line FT                   /note="g could be deleted"
None
Input line FT   unsure          911
None
Input line FT                   /note="m2g could be g"
None
Input line FT   modified_base   911
None
Input line FT                   /mod_base=m2g
None
Input line FT   modified_base   1059
None
Input line FT                   /mod_base=m5c
None
Input line FT   unsure          1245
None
Input line FT                   /note="t could be g"
None
Input line FT   modified_base   1366
None
Input line FT                   /note="m4c"
None
Input line FT                   /mod_base=OTHER
None
Input line FT   unsure          1371
None
Input line FT                   /note="t could be c"
None
Input line FT   modified_base   1372
None
Input line FT                   /mod_base=m5c
None
Input line FT   unsure          1372
None
Input line FT                   /note="m5c could be c"
None
Input line FT   modified_base   1480
None
Input line FT                   /note="m26a"
None
Input line FT                   /mod_base=OTHER
None
Input line FT   modified_base   1481
None
Input line FT                   /note="m26a"
None
Input line FT                   /mod_base=OTHER
None
Input line XX
None
Input line SQ   Sequence 1504 BP; 367 A; 354 C; 471 G; 312 T; 0 other;
None
Input line >ECRRDB01
None
Input line aaattgagagtttgatcatggctcagattgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacagcagaagggcttgctgcttttgacgctggacggcgagtgtgtaatgtctgggaaactgcctggggggagatgataacacttggaaacggtagctaatacgtgcataatgtcgcaagaccgaaagagggggaccttcgggcctcttgccatcggatgcccagatgggattaggggtagctagtaacgagtggctcacctaggcgacgattccagctggtctgagagggatgaccagcaccactggaactgagacacggtccagactcctacgggggcagcagtggggaatattgcacaatgggcgcaagcctgatgcagccatgtgccgtatgaaggaagccttcgggttgtgaagggagtaaagtctaatactttgctcattgttacccgacgcagcgaagaagccacgtactttcagcgagagaagggggggtggctaactccgtgccagcagccgcggtaatacgaggttaatcgcaagcgtgggcggaattactgtaaagcacgagcgcctggtttgttaagtcagatgtgaaatccccgggcctaaccctgggaactgcatctgatactggcaagcttgtaggtctcggagaggtagaattccagtagagatctggggaataccggtggcggaagcccccctggcggactgacgaaagctcaggtgtgcgggggcatactccgccggtagtccacgtaaacgatgtcgtggggtgacttgccccttgaggcgtggccttcgaggcgctaacgttaagtcgcctgacccgggggggtacgccgcaaggttaaaactcaaatcgaattgggggcccggagcacaagacgcatgatgtgcgtttaattcgcaacgaagaaccttacctggtcttgaccatcacggaagtgttttcagagatgagaatgtgcttccgggaaccgagacagctgcatggctgtcaggtcgtgttgtgttgcgaaatgggtcccgttaagttgcctgcaacgagcaacccttatcctttgttgccagcgggaactcaaagagagactgccagccgtccgtggattaaacgagggggggaagtggggatgacgtcaagtcatcatggcccccttcacgaccagggcacacactgtgctacaatggcgcatcacaaagagagcgactcccgcgagagcaagcggatctcataaagtcgtgcgtagtctgaggtccggattgctaaccgactccatgaagtcggaatcgctagtgtaatcggatccagaatgcaccggtgaatacgttcccgggccttgtacacacgccccgtcacaccatggggtggaggtgactgtgggttgatattcgtccaaaagaagtaggtagcttaaccttcgggagggcttaccactttgtcgtaacaaggtaaccgtaggggaacctgcggttggatcacctcctta
[(41, 62)]