dangle.dh

mfold

DANGLE ENTHALPIES - mostly from Turner et al. Ann. Rev. Biophys. Biophys. Chem 
                    (1988) 17 pp 167-92. 
          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    U        A    C    G    U        A    C    G    U        A    C    G    U 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         AX                      AX                      AX                      AX 
         A                       C                       G                       U 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .     .     .     .     .     .     .     .     .   -4.90 -0.90 -5.50 -2.30 

          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    U        A    C    G    U        A    C    G    U        A    C    G    U 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         CX                      CX                      CX                      CX 
         A                       C                       G                       U 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .     .     .     .     .   -9.00 -4.10 -8.60 -7.50   .     .     .     . 

          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    U        A    C    G    U        A    C    G    U        A    C    G    U 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         GX                      GX                      GX                      GX 
         A                       C                       G                       U 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .   -7.40 -2.80 -6.40 -3.60   .     .     .     .   -4.90 -0.90 -5.50 -2.30 

          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    U        A    C    G    U        A    C    G    U        A    C    G    U 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         UX                      UX                      UX                      UX 
         A                       C                       G                       U 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
-5.70 -0.70 -5.80 -2.20   .     .     .     .   -7.40 -2.40 -7.20 -4.90   .     .     .     . 

          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    U        A    C    G    U        A    C    G    U        A    C    G    U 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         A                       A                       A                       A 
         AX                      CX                      GX                      UX 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .     .     .     .     .     .     .     .     .   -0.50  6.90 -0.60 -0.60 

          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    U        A    C    G    U        A    C    G    U        A    C    G    U 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         C                       C                       C                       C 
         AX                      CX                      GX                      UX 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .     .     .     .     .   -1.60  0.70 -4.60 -0.40   .     .     .     . 

          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    U        A    C    G    U        A    C    G    U        A    C    G    U 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         G                       G                       G                       G 
         AX                      CX                      GX                      UX 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .   -2.40  3.30  0.80 -1.40   .     .     .     .   -1.50  5.10  0.10  1.00 

          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    U        A    C    G    U        A    C    G    U        A    C    G    U 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         U                       U                       U                       U 
         AX                      CX                      GX                      UX 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
 1.60  2.20  0.70  3.10   .     .     .     .     1.60  2.20  0.70  3.10  .     .     .     .