dangle.dgd

mfold

 
          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         AX                      AX                      AX                      AX 
         A                       C                       G                       T 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .     .     .     .     .     .     .     .     .   -0.12  0.28 -0.01  0.13 
 
 
          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         CX                      CX                      CX                      CX 
         A                       C                       G                       T 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .     .     .     .     .   -0.82 -0.31 -0.01 -0.52   .     .     .     . 
 
 
          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         GX                      GX                      GX                      GX 
         A                       C                       G                       T 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .   -0.92 -0.23 -0.44 -0.35   .     .     .     .   -0.20 -0.20 -0.20 -0.20 
 
 
          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         TX                      TX                      TX                      TX 
         A                       C                       G                       T 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
-0.48 -0.19 -0.50 -0.29   .     .     .     .   -0.20 -0.20 -0.20 -0.20   .     .     .     . 
 
 
          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         A                       A                       A                       A 
         AX                      CX                      GX                      TX 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .     .     .     .     .     .     .     .     .   -0.50 -0.02  0.48 -0.10 
 
 
          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         C                       C                       C                       C 
         AX                      CX                      GX                      TX 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .     .     .     .     .   -0.58 -0.34 -0.56 -0.61   .     .     .     . 
 
  
          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         G                       G                       G                       G 
         AX                      CX                      GX                      TX 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .   -0.96 -0.52 -0.72 -0.58   .     .     .     .   -0.10 -0.10 -0.10 -0.10 
 
 
          X                       X                       X                       X 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         T                       T                       T                       T 
         AX                      CX                      GX                      TX 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
-0.51 -0.42 -0.62 -0.71   .     .     .     .   -0.10 -0.10 -0.10 -0.10   .     .     .     .