stack.dh

mfold

Data Arangement: 
                 Y 
         ------------------ 
     (X)  A    C    G    U 
         ------------------ 
             5' ==> 3' 
                AX 
                AY 
             3' <== 5' 
     (A)   .     .     .     . 
     (C)   .     .     .     . 
     (G)   .     .     .     . 
     (U) -0.70 -0.10 -0.70 -0.10 
-------------------------------- 
STACKING ENTHALPIES : 

          Y                       Y                       Y                       Y 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    U        A    C    G    U        A    C    G    U        A    C    G    U 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         AX                      AX                      AX                      AX 
         AY                      CY                      GY                      UY 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .     .     .     .     .     .     .     .     .     .     .     .   -6.60 
  .     .     .     .     .     .     .     .     .     .     .     .     .     .   -10.20  . 
  .     .     .     .     .     .     .     .     .     .     .     .     .   -7.60   .   -3.60 
  .     .     .     .     .     .     .     .     .     .     .     .   -5.70   .   -4.00   . 

          Y                       Y                       Y                       Y 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    U        A    C    G    U        A    C    G    U        A    C    G    U 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         CX                      CX                      CX                      CX 
         AY                      CY                      GY                      UY 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .     .     .     .     .     .     .     .   -10.50  .     .     .     . 
  .     .     .     .     .     .     .     .     .     .   -12.20  .     .     .     .     . 
  .     .     .     .     .     .     .     .     .   -8.00   .   -1.80   .     .     .     . 
  .     .     .     .     .     .     .     .   -7.60   .   -12.70  .     .     .     .     . 

          Y                       Y                       Y                       Y 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    U        A    C    G    U        A    C    G    U        A    C    G    U 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         GX                      GX                      GX                      GX 
         AY                      CY                      GY                      UY 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .     .     .     .     .   -13.30  .     .     .     .     .     .     .   -3.60 
  .     .     .     .     .     .   -14.20  .     .     .     .     .     .     .   -9.70   . 
  .     .     .     .     .   -12.20  .   -5.30   .     .     .     .     .   -12.70  .   -3.60 
  .     .     .     .   -10.20  .   -9.70   .     .     .     .     .   -4.00   .   -2.70   . 

          Y                       Y                       Y                       Y 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    U        A    C    G    U        A    C    G    U        A    C    G    U 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         UX                      UX                      UX                      UX 
         AY                      CY                      GY                      UY 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .   -8.10   .     .     .     .     .     .     .   -4.00   .     .     .     . 
  .     .   -13.30  .     .     .     .     .     .     .   -5.30   .     .     .     .     . 
  .   -10.50  .   -4.00   .     .     .     .     .   -1.80   .   -5.30   .     .     .     . 
-6.60   .   -3.60   .     .     .     .     .   -3.60   .   -3.60   .     .     .     .     .