stack.ent

mfold

Data Arangement:                                                                                
                                                                                                
                 Y                                                                              
         ------------------                                                                     
     (X)  A    C    G    T                                                                      
         ------------------                                                                     
             5' ==> 3'                                                                          
                AX                                                                              
                AY                                                                              
             3' <== 5'                                                                          
     (A)   .     .     .     .                                                                  
     (C)   .     .     .     .                                                                  
     (G)   .     .     .     .                                                                  
     (T) -0.70 -0.10 -0.70 -0.10                                                                
                                                                                                
--------------------------------                                                                
STACKING ENERGIES :                                                                             
                                                                                                
          Y                       Y                       Y                       Y             
  ------------------      ------------------      ------------------      ------------------    
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T     
  ------------------      ------------------      ------------------      ------------------    
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3'         
         AX                      AX                      AX                      AX             
         AY                      CY                      GY                      TY             
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5'         
   .     .     .     .     .     .     .     .     .     .     .     .     .     .     .   -2.22
   .     .     .     .     .     .     .     .     .     .     .     .     .     .   -2.24   .  
   .     .     .     .     .     .     .     .     .     .     .     .     .   -2.10   .    0.09
   .     .     .     .     .     .     .     .     .     .     .     .   -2.04   .   -0.83   .  
                                                                                                
                                                                                                
          Y                       Y                       Y                       Y             
  ------------------      ------------------      ------------------      ------------------    
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T     
  ------------------      ------------------      ------------------      ------------------    
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3'         
         CX                      CX                      CX                      CX             
         AY                      CY                      GY                      TY             
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5'         
   .     .     .     .     .     .     .     .     .     .     .   -2.27   .     .     .     .  
   .     .     .     .     .     .     .     .     .     .   -1.99   .     .     .     .     .  
   .     .     .     .     .     .     .     .     .   -2.72   .   -1.17   .     .     .     .  
   .     .     .     .     .     .     .     .   -2.10   .   -0.80   .     .     .     .     .  
                                                                                                
                                                                                                
          Y                       Y                       Y                       Y             
  ------------------      ------------------      ------------------      ------------------    
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T     
  ------------------      ------------------      ------------------      ------------------    
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3'         
         GX                      GX                      GX                      GX             
         AY                      CY                      GY                      TY             
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5'         
   .     .     .     .     .     .     .   -2.22   .     .     .     .     .     .     .   -0.53
   .     .     .     .     .     .   -2.44   .     .     .     .     .     .     .   -1.23   .  
   .     .     .     .     .   -1.99   .    1.04   .     .     .     .     .   -0.80   .    1.63
   .     .     .     .   -2.24   .   -1.23   .     .     .     .     .   -0.83   .    0.95   .  
                                                                                                
                                                                                                
          Y                       Y                       Y                       Y             
  ------------------      ------------------      ------------------      ------------------    
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T     
  ------------------      ------------------      ------------------      ------------------    
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3'         
         TX                      TX                      TX                      TX             
         AY                      CY                      GY                      TY             
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5'         
   .     .     .   -2.13   .     .     .     .     .     .     .   -0.17   .     .     .     .  
   .     .   -2.22   .     .     .     .     .     .     .    1.04   .     .     .     .     .  
   .   -2.27   .   -0.17   .     .     .     .     .   -1.17   .   -0.62   .     .     .     .  
 -2.22   .   -0.53   .     .     .     .     .    0.09   .    1.63   .     .     .     .     .