tstacki.dhd

mfold

Data Arangement: 
                 Y 
         ------------------ 
     (X)  A    C    G    T 
         ------------------ 
             5' ==> 3' 
                AX 
                AY 
             3' <== 5' 
     (A)   .     .     .     . 
     (C)   .     .     .     . 
     (G)   .     .     .     . 
     (T) -0.70 -0.10 -0.70 -0.10 
-------------------------------- 
STACKING ENTHALPIES : TERMINAL MISMATCHES 

          Y                       Y                       Y                       Y 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         AX                      AX                      AX                      AX 
         AY                      CY                      GY                      TY 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .   -2.70   .     .     .   -2.60   .     .     .   -1.90 -3.20 -0.90 -2.30  0.00 
  .     .   -6.00   .     .     .   -2.80   .     .     .   -4.00   .   -2.20 -0.50  0.00 -1.20 
  .   -2.80   .    0.00   .   -2.40   .    0.00   .   -5.10   .    0.00 -2.70  0.00 -1.30 -2.90 
-3.20   .    0.00   .   -2.20   .    0.00   .   -2.70   .    0.00   .    0.00 -2.80 -3.50 -2.40 

          Y                       Y                       Y                       Y 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         CX                      CX                      CX                      CX 
         AY                      CY                      GY                      TY 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .   -2.60   .     .     .   -1.40 -2.80 -2.00 -3.00  0.00   .     .     .   -1.40 
  .     .   -4.00   .     .     .   -2.50   .   -2.40 -1.40  0.00 -2.40   .     .   -2.50   . 
  .   -2.00   .    0.00   .   -1.40   .    0.00 -5.10  0.00 -2.90 -2.90   .   -3.10   .    0.00 
-0.90   .    0.00   .   -0.50   .    0.00   .    0.00 -3.10 -5.90 -5.30 -2.80   .    0.00   . 

          Y                       Y                       Y                       Y 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         GX                      GX                      GX                      GX 
         AY                      CY                      GY                      TY 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
  .     .     .   -2.40 -6.00 -4.00 -3.40  0.00   .     .     .   -1.50  0.00  0.00  0.00 -3.70 
  .     .   -3.40   .   -2.80 -2.50  0.00 -3.30   .     .   -5.30   .    0.00  0.00 -4.50  0.00 
  .   -3.00   .    0.00 -4.00  0.00 -5.30 -3.70   .   -2.90   .    0.00  0.00 -5.90  0.00 -2.00 
-2.30   .    0.00   .    0.00 -2.50 -4.50 -6.10 -1.30   .    0.00   .   -3.50  0.00 -2.00  0.00 

          Y                       Y                       Y                       Y 
  ------------------      ------------------      ------------------      ------------------ 
   A    C    G    T        A    C    G    T        A    C    G    T        A    C    G    T 
  ------------------      ------------------      ------------------      ------------------ 
      5' --> 3'               5' --> 3'               5' --> 3'               5' --> 3' 
         TX                      TX                      TX                      TX 
         AY                      CY                      GY                      TY 
      3' <-- 5'               3' <-- 5'               3' <-- 5'               3' <-- 5' 
-2.70 -2.60 -2.40  0.00   .     .     .   -2.70  0.00  0.00  0.00 -2.30   .     .     .   -2.30 
-2.60 -0.50  0.00 -2.70   .     .   -3.30   .    0.00  0.00 -3.70  0.00   .     .   -6.10   . 
-1.90  0.00 -1.50 -2.30   .   -2.40   .    0.00  0.00 -2.90  0.00 -2.00   .   -5.30   .    0.00 
 0.00 -1.40 -3.70 -2.30 -1.20   .    0.00   .   -2.90  0.00 -2.00  0.00 -2.40   .    0.00   .