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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN"><!--Converted with LaTeX2HTML 98.1p1 release (March 2nd, 1998)originally by Nikos Drakos (nikos@cbl.leeds.ac.uk), CBLU, University of Leeds* revised and updated by:  Marcus Hennecke, Ross Moore, Herb Swan* with significant contributions from:  Jens Lippmann, Marek Rouchal, Martin Wilck and others --><HTML><HEAD><TITLE>Contents</TITLE><META NAME="description" CONTENT="Contents"><META NAME="keywords" CONTENT="FEBS98-html"><META NAME="resource-type" CONTENT="document"><META NAME="distribution" CONTENT="global"><META HTTP-EQUIV="Content-Type" CONTENT="text/html; charset=iso-8859-1"><LINK REL="STYLESHEET" HREF="FEBS98-html.css"><LINK REL="next" HREF="node2.html"><LINK REL="previous" HREF="FEBS98-html.html"><LINK REL="up" HREF="FEBS98-html.html"><LINK REL="next" HREF="node2.html"></HEAD><BODY BGCOLOR=#FFDEAD TEXT=#202020 LINK=#800000 ALINK=#ffff00 VLINK=#353976><!--Navigation Panel--><A NAME="tex2html54" HREF="node2.html"><IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next" SRC="img/next_motif.gif"></A> <A NAME="tex2html52" HREF="FEBS98-html.html"><IMG WIDTH="26" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="up" SRC="img/up_motif.gif"></A> <A NAME="tex2html46" HREF="FEBS98-html.html"><IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous" SRC="img/previous_motif.gif"></A>   <BR><B> Next:</B> <A NAME="tex2html55" HREF="node2.html">Abstract</A><B> Up:</B> <A NAME="tex2html53" HREF="FEBS98-html.html">Algorithms and Thermodynamics for</A><B> Previous:</B> <A NAME="tex2html47" HREF="FEBS98-html.html">Algorithms and Thermodynamics for</A><BR><BR><!--End of Navigation Panel--><BR><H2><A NAME="SECTION00010000000000000000">Contents</A></H2><!--Table of Contents--><FONT SIZE=5><UL><LI><A NAME="tex2html56" HREF="node2.html">Abstract</A><LI><A NAME="tex2html57" HREF="node3.html">Introduction</A><LI><A NAME="tex2html58" HREF="node4.html">Software platforms and environment</A><LI><A NAME="tex2html59" HREF="node5.html">Loops and Nearest neighbor rules</A><LI><A NAME="tex2html60" HREF="node6.html">Constrained folding</A><LI><A NAME="tex2html61" HREF="node7.html">Running the programs</A><UL><LI><A NAME="tex2html62" HREF="node8.html"><SMALL>COMMAND LINE PARAMETERS</SMALL></A><LI><A NAME="tex2html63" HREF="node9.html">O<SMALL>UTPUT</SMALL></A><LI><A NAME="tex2html64" HREF="node12.html"><SMALL>AUXILIARY AND INDIVIDUAL PROGRAMS</SMALL></A></UL><LI><A NAME="tex2html65" HREF="node13.html">Sample foldings</A><UL><LI><A NAME="tex2html66" HREF="node14.html">E<SMALL>XAMPLE 1</SMALL></A><LI><A NAME="tex2html67" HREF="node15.html">E<SMALL>XAMPLE 2</SMALL></A><LI><A NAME="tex2html68" HREF="node16.html">E<SMALL>XAMPLE 3</SMALL></A></UL><LI><A NAME="tex2html69" HREF="node17.html">Future plans</A><LI><A NAME="tex2html70" HREF="node19.html">Bibliography</A></UL></FONT><!--End of Table of Contents--><P><BR><HR><ADDRESS><TABLE><TR><TD><IMG SRC=img/shield16.gif HSPACE=20></TD><TD><I>Michael Zuker <BR>Institute for Biomedical Computing<BR>Washington University in St. Louis<BR>1998-12-05</I></TD></TR></TABLE></ADDRESS></BODY></HTML>

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