makefile-quikfold

mfold

# Makefile for quikfold and quikfold-tback version 3.1
# Michael Zuker 
# Rensselaer Polytechnic Institute
SHELL	= /bin/sh

# Set optimization flags as high as possible. What you see below is
# only a guide.
# Must choose 1 definition for FFLAGS and CFLAGS or make up your own
#FFLAGS	= -O3 -col120 -static -mips4 # SGI with mips4
#FFLAGS	= -O3 -col120 -static -mips2 # SGI with mips2
FFLAGS	= -O3 -fno-automatic -ffixed-line-length-none # gnu Fortran
#FFLAGS	= -O3 -extend_source # Compaq Alpha 8400 (Tru64 Unix 4.0D)
#FFLAGS	= -Bstatic -O3 -e # Sun/Solaris (no dynamic library links)
#FFLAGS	= -O2 -e # Sun/Solaris

# Define compiler as appropriate
FTN	= g77 
#FTN	= f77 

#BINDIR	= /usr/local/bin
#DATDIR	= /usr/local/share/mfold
BINDIR	= /home/apps/bin
DATDIR	= /home/apps/share/mfold

MAXN1	= 9000
MAXN2	= 800

######################################################################
# Nothing below here need be edited when installing. #
######################################################################

BINEXE	= bin/quikfold bin/quik-tback bin/quikfold-faster

BINS	= $(BINEXE)

all: $(BINEXE) 
	strip $(BINEXE) ; chmod 755 $(BINS) 

clean:
	rm -f $(BINEXE) src/maxn*.inc 

install: $(BINEXE)
	cp $(BINEXE) $(BINDIR)
	@echo "Executables copied to $(BINDIR)"
	@echo "Everything is installed. You can do a 'make clean'"

# quikfold

QUIK	= src/quik.f src/rna-quik.f src/misc-quik.f src/dc.f src/multid.f

bin/quikfold: src/maxn1.inc src/maxn2.inc $(QUIK)
	$(FTN) $(FFLAGS) -o bin/quikfold $(QUIK) 

# quik-tback

QUIKT	= src/quik-tback.f src/rna-quik.f src/misc-quik-tback.f src/dc.f 

bin/quik-tback: src/maxn1.inc $(QUIKT)
	$(FTN) $(FFLAGS) -o bin/quik-tback $(QUIKT) 

# quikfold-faster

QUIKF	= src/quik-faster.f src/rna-quik.f src/misc-quik.f src/dc.f \
	  src/multid.f

bin/quikfold-faster: src/maxn1.inc src/maxn2.inc $(QUIKF)
	$(FTN) $(FFLAGS) -o bin/quikfold-faster $(QUIKF) 

src/maxn1.inc:
	echo "      parameter (maxn=$(MAXN1))" > src/maxn1.inc

src/maxn2.inc:
	echo "      parameter (maxn=$(MAXN2))" > src/maxn2.inc