geneticsearch.html

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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"><!--NewPage--><HTML><HEAD><!-- Generated by javadoc (build 1.5.0_10) on Fri Jan 26 16:34:41 NZDT 2007 --><TITLE>GeneticSearch</TITLE><META NAME="keywords" CONTENT="weka.attributeSelection.GeneticSearch class"><LINK REL ="stylesheet" TYPE="text/css" HREF="../../stylesheet.css" TITLE="Style"><SCRIPT type="text/javascript">function windowTitle(){    parent.document.title="GeneticSearch";}</SCRIPT><NOSCRIPT></NOSCRIPT></HEAD><BODY BGCOLOR="white" onload="windowTitle();"><!-- ========= START OF TOP NAVBAR ======= --><A NAME="navbar_top"><!-- --></A><A HREF="#skip-navbar_top" title="Skip navigation links"></A><TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY=""><TR><TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1"><A NAME="navbar_top_firstrow"><!-- --></A><TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">  <TR ALIGN="center" VALIGN="top">  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../index-all.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="http://www.cs.waikato.ac.nz/ml/weka/" target="_blank"><FONT CLASS="NavBarFont1"><B>Weka's home</B></FONT></A>&nbsp;</TD>  </TR></TABLE></TD><TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM></EM></TD></TR><TR><TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">&nbsp;<A HREF="../../weka/attributeSelection/GainRatioAttributeEval.html" title="class in weka.attributeSelection"><B>PREV CLASS</B></A>&nbsp;&nbsp;<A HREF="../../weka/attributeSelection/GreedyStepwise.html" title="class in weka.attributeSelection"><B>NEXT CLASS</B></A></FONT></TD><TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">  <A HREF="../../index.html?weka/attributeSelection/GeneticSearch.html" target="_top"><B>FRAMES</B></A>  &nbsp;&nbsp;<A HREF="GeneticSearch.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;&nbsp;<SCRIPT type="text/javascript">  <!--  if(window==top) {    document.writeln('<A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>');  }  //--></SCRIPT><NOSCRIPT>  <A HREF="../../allclasses-noframe.html"><B>All Classes</B></A></NOSCRIPT></FONT></TD></TR><TR><TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">  SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD><TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">DETAIL:&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD></TR></TABLE><A NAME="skip-navbar_top"></A><!-- ========= END OF TOP NAVBAR ========= --><HR><!-- ======== START OF CLASS DATA ======== --><H2><FONT SIZE="-1">weka.attributeSelection</FONT><BR>Class GeneticSearch</H2><PRE>java.lang.Object  <IMG SRC="../../resources/inherit.gif" ALT="extended by "><A HREF="../../weka/attributeSelection/ASSearch.html" title="class in weka.attributeSelection">weka.attributeSelection.ASSearch</A>      <IMG SRC="../../resources/inherit.gif" ALT="extended by "><B>weka.attributeSelection.GeneticSearch</B></PRE><DL><DT><B>All Implemented Interfaces:</B> <DD>java.io.Serializable, <A HREF="../../weka/attributeSelection/StartSetHandler.html" title="interface in weka.attributeSelection">StartSetHandler</A>, <A HREF="../../weka/core/OptionHandler.html" title="interface in weka.core">OptionHandler</A>, <A HREF="../../weka/core/TechnicalInformationHandler.html" title="interface in weka.core">TechnicalInformationHandler</A></DD></DL><HR><DL><DT><PRE>public class <B>GeneticSearch</B><DT>extends <A HREF="../../weka/attributeSelection/ASSearch.html" title="class in weka.attributeSelection">ASSearch</A><DT>implements <A HREF="../../weka/attributeSelection/StartSetHandler.html" title="interface in weka.attributeSelection">StartSetHandler</A>, <A HREF="../../weka/core/OptionHandler.html" title="interface in weka.core">OptionHandler</A>, <A HREF="../../weka/core/TechnicalInformationHandler.html" title="interface in weka.core">TechnicalInformationHandler</A></DL></PRE><P><!-- globalinfo-start --> GeneticSearch:<br/> <br/> Performs a search using the simple genetic algorithm described in Goldberg (1989).<br/> <br/> For more information see:<br/> <br/> David E. Goldberg (1989). Genetic algorithms in search, optimization and machine learning. Addison-Wesley. <p/> <!-- globalinfo-end --> <!-- technical-bibtex-start --> BibTeX: <pre> &#64;book{Goldberg1989,    author = {David E. Goldberg},    publisher = {Addison-Wesley},    title = {Genetic algorithms in search, optimization and machine learning},    year = {1989},    ISBN = {0201157675} } </pre> <p/> <!-- technical-bibtex-end --> <!-- options-start --> Valid options are: <p/>  <pre> -P &lt;start set&gt;  Specify a starting set of attributes.  Eg. 1,3,5-7.If supplied, the starting set becomes  one member of the initial random  population.</pre>  <pre> -Z &lt;population size&gt;  Set the size of the population.  (default = 10).</pre>  <pre> -G &lt;number of generations&gt;  Set the number of generations.  (default = 20)</pre>  <pre> -C &lt;probability of crossover&gt;  Set the probability of crossover.  (default = 0.6)</pre>  <pre> -M &lt;probability of mutation&gt;  Set the probability of mutation.  (default = 0.033)</pre>  <pre> -R &lt;report frequency&gt;  Set frequency of generation reports.  e.g, setting the value to 5 will    report every 5th generation  (default = number of generations)</pre>  <pre> -S &lt;seed&gt;  Set the random number seed.  (default = 1)</pre>  <!-- options-end --><P><P><DL><DT><B>Version:</B></DT>  <DD>$Revision: 1.16 $</DD><DT><B>Author:</B></DT>  <DD>Mark Hall (mhall@cs.waikato.ac.nz)</DD><DT><B>See Also:</B><DD><A HREF="../../serialized-form.html#weka.attributeSelection.GeneticSearch">Serialized Form</A></DL><HR><P><!-- ======== CONSTRUCTOR SUMMARY ======== --><A NAME="constructor_summary"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2"><B>Constructor Summary</B></FONT></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#GeneticSearch()">GeneticSearch</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Constructor.</TD></TR></TABLE>&nbsp;<!-- ========== METHOD SUMMARY =========== --><A NAME="method_summary"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2"><B>Method Summary</B></FONT></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#crossoverProbTipText()">crossoverProbTipText</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the tip text for this property</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;double</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#getCrossoverProb()">getCrossoverProb</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;get the probability of crossover</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;int</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#getMaxGenerations()">getMaxGenerations</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;get the number of generations</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;double</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#getMutationProb()">getMutationProb</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;get the probability of mutation</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;java.lang.String[]</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#getOptions()">getOptions</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Gets the current settings of ReliefFAttributeEval.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;int</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#getPopulationSize()">getPopulationSize</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;get the size of the population</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;int</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#getReportFrequency()">getReportFrequency</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;get how often repports are generated</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;int</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#getSeed()">getSeed</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;get the value of the random number generator's seed</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#getStartSet()">getStartSet</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns a list of attributes (and or attribute ranges) as a String</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;<A HREF="../../weka/core/TechnicalInformation.html" title="class in weka.core">TechnicalInformation</A></CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#getTechnicalInformation()">getTechnicalInformation</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns an instance of a TechnicalInformation object, containing  detailed information about the technical background of this class, e.g., paper reference or book this class is based on.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#globalInfo()">globalInfo</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns a string describing this search method</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;java.util.Enumeration</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#listOptions()">listOptions</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns an enumeration describing the available options.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#maxGenerationsTipText()">maxGenerationsTipText</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the tip text for this property</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#mutationProbTipText()">mutationProbTipText</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the tip text for this property</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#populationSizeTipText()">populationSizeTipText</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the tip text for this property</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#reportFrequencyTipText()">reportFrequencyTipText</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the tip text for this property</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;int[]</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#search(weka.attributeSelection.ASEvaluation, weka.core.Instances)">search</A></B>(<A HREF="../../weka/attributeSelection/ASEvaluation.html" title="class in weka.attributeSelection">ASEvaluation</A>&nbsp;ASEval,       <A HREF="../../weka/core/Instances.html" title="class in weka.core">Instances</A>&nbsp;data)</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Searches the attribute subset space using a genetic algorithm.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#seedTipText()">seedTipText</A></B>()</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the tip text for this property</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;void</CODE></FONT></TD><TD><CODE><B><A HREF="../../weka/attributeSelection/GeneticSearch.html#setCrossoverProb(double)">setCrossoverProb</A></B>(double&nbsp;c)</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;set the probability of crossover</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor">

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